C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: solute carrier family 25, member 39
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000591006 SLC25A39-004 ENSG00000013306 9606 - 17:44319627-44324147 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; BreastColonLiverLungOvaryENST00000591006
Transcript ID Breast Colon Liver Lung Ovary
ENST00000591006 0.983±0.00 1.167±0.00 0.268±0.00 0.108±0.00 1.245±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0009B6 CIL_0009B6_0001 VISTA 17:43966083-44567774
CIL_0007ST CIL_0007ST_0001 VISTA 17:44247434-44848646
CIL_0005J9 CIL_0005J9_0001 CGP 17:44308413-44324870
CIL_0005J8 CIL_0005J8_0001 CGP 17:44319625-44353102

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000107098 Slc25a39-003 protein_coding Mus_musculus 0 597
ENSMUST00000155104 Slc25a39-010 protein_coding Mus_musculus 0 496
ENSMUST00000154001 Slc25a39-006 protein_coding Mus_musculus 0 490
ENSMUST00000153395 Slc25a39-002 retained_intron Mus_musculus 0 486
ENSMUST00000018821 Slc25a39-001 protein_coding Mus_musculus 0 486
ENSMUST00000130436 Slc25a39-008 protein_coding Mus_musculus 0 483
ENSMUST00000149777 Slc25a39-007 protein_coding Mus_musculus 0 483
ENSMUST00000141535 Slc25a39-015 retained_intron Mus_musculus 0 396
ENSMUST00000123688 Slc25a39-005 retained_intron Mus_musculus 0 254
ENSMUST00000142097 Slc25a39-014 nonsense_mediated_decay Mus_musculus 2e-37 161
ENSMUST00000134669 Slc25a39-013 nonsense_mediated_decay Mus_musculus 2e-37 161

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