C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: NOP58 ribonucleoprotein
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000055044 NOP58 9606 + 2:202265716-202303666 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000264279 NOP58-001 202265716-202303666 protein_coding
  ENST00000426814 NOP58-006 202265736-202284378 nonsense_mediated_decay
  ENST00000433543 NOP58-008 202284438-202297906 nonsense_mediated_decay
  ENST00000467734 NOP58-007 202265779-202284481 processed_transcript
  ENST00000472050 NOP58-003 202265765-202284434 processed_transcript
  ENST00000478508 NOP58-010 202299858-202303433 processed_transcript
  ENST00000478941 NOP58-004 202278131-202290372 retained_intron
  ENST00000488403 NOP58-002 202265736-202284712 retained_intron
  ENST00000492688 NOP58-005 202275162-202291051 processed_transcript
  ENST00000492740 NOP58-009 202265765-202275683 retained_intron

Homo sapiens EnsemblGRCh38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000264279ENST00000433543ENST00000478508ENST00000488403ENST00000492688
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000264279 8.604±0.00 19.913±0.00 0.606±0.00 6.037±4.22 4.320±2.03 7.708±5.45 4.082±3.03 14.118±0.00 6.595±4.05 8.388±0.00 3.056±0.00 28.049±23.39 10.639±6.41 19.092±0.99
ENST00000433543 N/A N/A 1.812±0.00 N/A N/A N/A 1.667±0.00 N/A N/A N/A N/A 63.802±0.00 N/A 18.889±0.00
ENST00000478508 N/A N/A N/A N/A N/A N/A N/A N/A N/A 3.940±0.00 N/A N/A N/A N/A
ENST00000488403 N/A N/A 2.910±0.00 N/A N/A N/A N/A N/A 3.956±0.00 N/A N/A N/A N/A N/A
ENST00000492688 N/A N/A N/A N/A N/A N/A N/A 6.967±0.00 N/A N/A 2.105±0.00 20.572±0.00 N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00020T CIL_00020T_0001 CGP 2:202206180-202303666
CIL_00020S CIL_00020S_0001 CGP 2:202265716-202567751

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005730 IDA nucleolus
GO:0005732 IDA small nucleolar ribonucleoprotein complex
GO:0005737 IDA cytoplasm
GO:0006364 TAS rRNA processing
GO:0006608 ISS snRNP protein import into nucleus
GO:0015030 IDA Cajal body
GO:0016020 IDA membrane
GO:0016049 TAS cell growth
GO:0030515 IDA snoRNA binding
GO:0031428 NAS box C/D snoRNP complex
GO:0044822 IDA poly(A) RNA binding
GO:0070761 IDA pre-snoRNP complex

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000058337 nop58 NOP58 ribonucleoprotein homolog (yeast) protein_coding Danio_rerio
ENSMUSG00000026020 Nop58 NOP58 ribonucleoprotein protein_coding Mus_musculus

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