C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: NOP58 ribonucleoprotein
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000026020 Nop58 10090 + 1:59684971-59719044 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000027174 Nop58-002 59684977-59711510 protein_coding
  ENSMUST00000185368 Nop58-008 59692444-59704209 retained_intron
  ENSMUST00000185772 Nop58-004 59685021-59696052 protein_coding
  ENSMUST00000186044 Nop58-005 59685006-59690989 retained_intron
  ENSMUST00000187491 Nop58-015 59704159-59709099 nonsense_mediated_decay
  ENSMUST00000187837 Nop58-011 59704198-59711279 protein_coding
  ENSMUST00000188390 Nop58-013 59704709-59711280 protein_coding
  ENSMUST00000189289 Nop58-007 59685003-59692688 retained_intron
  ENSMUST00000189327 Nop58-010 59685054-59698422 nonsense_mediated_decay
  ENSMUST00000189919 Nop58-012 59696027-59704161 nonsense_mediated_decay
  ENSMUST00000190231 Nop58-009 59684985-59696077 protein_coding
  ENSMUST00000190265 Nop58-014 59698416-59707064 nonsense_mediated_decay
  ENSMUST00000190759 Nop58-006 59690179-59698386 retained_intron
  ENSMUST00000191088 Nop58-003 59684971-59692666 processed_transcript
  ENSMUST00000191142 Nop58-001 59685009-59719044 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000027174ENSMUST00000187491ENSMUST00000187837ENSMUST00000188390ENSMUST00000189289ENSMUST00000189919ENSMUST00000190231ENSMUST00000190265ENSMUST00000191088ENSMUST00000191142
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000027174 8.094±4.49 3.052±0.67 6.157±0.11 9.607±5.08 5.448±0.87 5.202±1.33 3.726±0.38 4.217±1.06 10.800±8.59 4.625±0.84 3.564±0.38 8.639±5.72 21.036±14.26 14.155±1.10
ENSMUST00000187491 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 217.080±0.00 328.367±238.19 551.197±0.00
ENSMUST00000187837 N/A N/A N/A 29.622±0.00 N/A N/A N/A N/A N/A N/A 3.005±0.29 54.909±39.04 106.552±106.96 154.361±0.00
ENSMUST00000188390 N/A N/A N/A 24.455±0.00 N/A N/A N/A N/A N/A N/A N/A 72.246±0.00 136.747±93.74 165.088±0.00
ENSMUST00000189289 N/A 26.177±3.87 N/A N/A 15.488±8.65 20.039±6.58 N/A 4.259±1.54 4.058±0.00 6.690±1.35 N/A 22.096±5.95 N/A N/A
ENSMUST00000189919 N/A N/A N/A 18.552±0.00 N/A N/A N/A N/A N/A N/A N/A 53.520±0.00 27.056±0.00 N/A
ENSMUST00000190231 N/A 6.188±2.61 N/A N/A 10.566±4.18 N/A N/A N/A N/A N/A N/A 29.713±6.73 N/A N/A
ENSMUST00000190265 N/A N/A N/A 15.483±0.00 N/A N/A N/A N/A N/A N/A N/A 40.760±0.00 62.161±32.76 N/A
ENSMUST00000191088 8.625±0.00 10.138±1.01 N/A N/A 12.886±0.00 11.320±3.38 1.930±0.00 3.877±0.83 5.741±3.43 8.131±2.62 N/A 16.360±8.23 N/A 11.436±2.17
ENSMUST00000191142 0.530±0.34 0.379±0.09 0.817±0.00 1.938±0.68 0.316±0.05 N/A 0.146±0.03 0.188±0.05 0.990±0.93 0.338±0.06 0.424±0.07 1.046±0.44 1.331±0.12 0.399±0.07

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00020T CIL_00020T_0002 CGP 1:59586558-59719044
CIL_00020S CIL_00020S_0002 CGP 1:59684971-59879014

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005515 IEA protein binding
GO:0005634 IEA nucleus
GO:0005730 IC nucleolus
GO:0005732 IEA small nucleolar ribonucleoprotein complex
GO:0005737 IEA cytoplasm
GO:0006608 IEA snRNP protein import into nucleus
GO:0015030 IEA Cajal body
GO:0016020 IEA membrane
GO:0030515 IEA snoRNA binding
GO:0030519 ISO snoRNP binding
GO:0030529 IEA ribonucleoprotein complex
GO:0042254 IEA ribosome biogenesis
GO:0044822 IEA poly(A) RNA binding
GO:0070761 IEA pre-snoRNP complex

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000058337 nop58 NOP58 ribonucleoprotein homolog (yeast) protein_coding Danio_rerio
ENSG00000055044 NOP58 NOP58 ribonucleoprotein protein_coding Homo_sapiens

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