C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: NOP58 ribonucleoprotein
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000264279 NOP58-001 ENSG00000055044 9606 + 2:202265716-202303666 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000264279
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000264279 8.604±0.00 19.913±0.00 0.606±0.00 6.037±4.22 4.320±2.03 7.708±5.45 4.082±3.03 14.118±0.00 6.595±4.05 8.388±0.00 3.056±0.00 28.049±23.39 10.639±6.41 19.092±0.99

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00020T CIL_00020T_0001 CGP 2:202206180-202303666
CIL_00020S CIL_00020S_0001 CGP 2:202265716-202567751

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005730 IDA nucleolus
GO:0005732 IDA small nucleolar ribonucleoprotein complex
GO:0005737 IDA cytoplasm
GO:0006364 TAS rRNA processing
GO:0006608 ISS snRNP protein import into nucleus
GO:0015030 IDA Cajal body
GO:0016020 IDA membrane
GO:0016049 TAS cell growth
GO:0030515 IDA snoRNA binding
GO:0031428 NAS box C/D snoRNP complex
GO:0044822 IDA poly(A) RNA binding
GO:0070761 IDA pre-snoRNP complex

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000191142 Nop58-001 protein_coding Mus_musculus 0 2167
ENSMUST00000027174 Nop58-002 protein_coding Mus_musculus 0 1827
ENSMUST00000185368 Nop58-008 retained_intron Mus_musculus 0 841
ENSMUST00000190265 Nop58-014 nonsense_mediated_decay Mus_musculus 0 712
ENSMUST00000188390 Nop58-013 protein_coding Mus_musculus 0 693
ENSMUST00000189919 Nop58-012 nonsense_mediated_decay Mus_musculus 0 604
ENSMUST00000190759 Nop58-006 retained_intron Mus_musculus 0 501
ENSMUST00000187491 Nop58-015 nonsense_mediated_decay Mus_musculus 0 494
ENSMUST00000187837 Nop58-011 protein_coding Mus_musculus 0 411
ENSMUST00000185772 Nop58-004 protein_coding Mus_musculus 0 342
ENSMUST00000189327 Nop58-010 nonsense_mediated_decay Mus_musculus 0 326
ENSMUST00000189289 Nop58-007 retained_intron Mus_musculus 0 307
ENSMUST00000191088 Nop58-003 processed_transcript Mus_musculus 0 307
ENSMUST00000190231 Nop58-009 protein_coding Mus_musculus 0 226
ENSMUST00000186044 Nop58-005 retained_intron Mus_musculus 0 213

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