C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: NOP58 ribonucleoprotein
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000488403 NOP58-002 ENSG00000055044 9606 + 2:202265736-202284712 retained_intron

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderLiverENST00000488403
Transcript ID Bladder Liver
ENST00000488403 2.910±0.00 3.956±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00020T CIL_00020T_0001 CGP 2:202206180-202303666
CIL_00020S CIL_00020S_0001 CGP 2:202265716-202567751

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000191142 Nop58-001 protein_coding Mus_musculus 0 680
ENSMUST00000027174 Nop58-002 protein_coding Mus_musculus 0 680
ENSMUST00000190759 Nop58-006 retained_intron Mus_musculus 0 501
ENSMUST00000185368 Nop58-008 retained_intron Mus_musculus 0 377
ENSMUST00000185772 Nop58-004 protein_coding Mus_musculus 0 342
ENSMUST00000189327 Nop58-010 nonsense_mediated_decay Mus_musculus 0 326
ENSMUST00000189289 Nop58-007 retained_intron Mus_musculus 0 307
ENSMUST00000191088 Nop58-003 processed_transcript Mus_musculus 0 307
ENSMUST00000189919 Nop58-012 nonsense_mediated_decay Mus_musculus 0 302
ENSMUST00000190231 Nop58-009 protein_coding Mus_musculus 0 226
ENSMUST00000186044 Nop58-005 retained_intron Mus_musculus 0 213

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