C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info

Description: NOP58 ribonucleoprotein
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000433543 NOP58-008 ENSG00000055044 9606 + 2:202284438-202297906 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderHeartOvaryTestisENST00000433543
Transcript ID Bladder Heart Ovary Testis
ENST00000433543 1.812±0.00 1.667±0.00 63.802±0.00 18.889±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00020T CIL_00020T_0001 CGP 2:202206180-202303666
CIL_00020S CIL_00020S_0001 CGP 2:202265716-202567751

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005634 IDA nucleus
GO:0005730 IDA nucleolus
GO:0005737 IDA cytoplasm

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000190265 Nop58-014 nonsense_mediated_decay Mus_musculus 0 992
ENSMUST00000191142 Nop58-001 protein_coding Mus_musculus 0 712
ENSMUST00000027174 Nop58-002 protein_coding Mus_musculus 0 712
ENSMUST00000185368 Nop58-008 retained_intron Mus_musculus 0 529
ENSMUST00000189919 Nop58-012 nonsense_mediated_decay Mus_musculus 0 368
ENSMUST00000188390 Nop58-013 protein_coding Mus_musculus 0 285
ENSMUST00000187491 Nop58-015 nonsense_mediated_decay Mus_musculus 0 285
ENSMUST00000187837 Nop58-011 protein_coding Mus_musculus 0 191

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