C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: syntaxin 4
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000103496 STX4 9606 + 16:31032889-31042975 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000313843 STX4-001 31033491-31040168 protein_coding
  ENST00000394998 STX4-003 31033095-31040163 protein_coding
  ENST00000457779 STX4-005 31032889-31035032 protein_coding
  ENST00000460668 STX4-009 31033547-31038187 nonsense_mediated_decay
  ENST00000461455 STX4-007 31033588-31034877 retained_intron
  ENST00000468583 STX4-012 31038619-31040168 retained_intron
  ENST00000475862 STX4-011 31038601-31040168 retained_intron
  ENST00000478150 STX4-008 31033786-31034507 retained_intron
  ENST00000486660 STX4-010 31038510-31040012 retained_intron
  ENST00000487411 STX4-004 31033546-31039803 retained_intron
  ENST00000493902 STX4-002 31033095-31040129 processed_transcript
  ENST00000496977 STX4-006 31033547-31038647 nonsense_mediated_decay
  ENST00000503629 STX4-016 31039080-31042975 processed_transcript
  ENST00000564368 STX4-017 31039320-31040147 processed_transcript
  ENST00000565483 STX4-014 31033606-31034853 retained_intron
  ENST00000566353 STX4-013 31033557-31034518 retained_intron
  ENST00000613541 STX4-018 31033805-31034877 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000313843ENST00000394998ENST00000457779ENST00000460668ENST00000468583ENST00000475862ENST00000486660ENST00000487411ENST00000496977ENST00000503629ENST00000613541
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000313843 36.832±0.00 35.534±0.00 1.244±0.00 17.412±0.00 12.012±11.14 20.875±19.41 7.433±6.76 26.588±0.00 7.509±5.09 21.505±19.23 17.988±0.00 19.478±13.69 29.363±5.75 15.236±10.60
ENST00000394998 N/A N/A N/A N/A N/A N/A N/A 0.408±0.00 N/A N/A N/A N/A N/A N/A
ENST00000457779 N/A N/A N/A N/A N/A N/A 0.472±0.00 N/A N/A N/A N/A 1.833±0.00 N/A N/A
ENST00000460668 N/A N/A N/A N/A N/A N/A 0.239±0.00 N/A N/A N/A N/A N/A N/A N/A
ENST00000468583 N/A N/A 1.164±0.00 N/A 2.814±0.00 N/A N/A N/A N/A N/A 2.084±0.00 N/A N/A N/A
ENST00000475862 N/A N/A N/A 3.569±0.00 2.404±0.00 N/A N/A N/A N/A N/A 1.096±0.00 N/A N/A N/A
ENST00000486660 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 73.411±0.00 63.446±0.00 32.588±0.00
ENST00000487411 8.295±0.00 14.594±0.00 N/A N/A 10.706±0.00 N/A N/A N/A N/A 6.281±5.36 2.007±0.00 12.845±3.40 N/A 3.910±0.00
ENST00000496977 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 6.122±0.00
ENST00000503629 N/A N/A N/A 1.729±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000613541 N/A N/A N/A N/A N/A N/A N/A 1.733±0.00 N/A N/A N/A N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001XW CIL_0001XW_0001 CGP 16:30989256-31042975
CIL_0001UH CIL_0001UH_0001 CGP 16:31032889-31074320

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000149 IEA SNARE binding
GO:0005484 IEA SNAP receptor activity
GO:0005515 IPI:IEA protein binding
GO:0005737 IEA cytoplasm
GO:0005773 TAS vacuole
GO:0005802 IEA trans-Golgi network
GO:0005829 TAS cytosol
GO:0005886 IDA plasma membrane
GO:0006836 IEA neurotransmitter transport
GO:0006886 IEA intracellular protein transport
GO:0006892 TAS post-Golgi vesicle-mediated transport
GO:0007596 TAS blood coagulation
GO:0009986 IDA cell surface
GO:0016020 TAS:IEA membrane
GO:0016021 IEA integral component of membrane
GO:0016192 IEA vesicle-mediated transport
GO:0016323 IDA basolateral plasma membrane
GO:0030168 TAS platelet activation
GO:0031201 IDA SNARE complex
GO:0035493 IEA SNARE complex assembly
GO:0035749 IEA myelin sheath adaxonal region
GO:0042581 IDA specific granule
GO:0043219 IEA lateral loop
GO:0048471 IEA perinuclear region of cytoplasm
GO:0061024 TAS membrane organization
GO:0070062 IDA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000052518 stx4 syntaxin 4 protein_coding Danio_rerio
ENSMUSG00000030805 Stx4a syntaxin 4A (placental) protein_coding Mus_musculus

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