C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: syntaxin 4A (placental)
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000030805 Stx4a 10090 + 7:127824294-127849019 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000033075 Stx4a-001 127841764-127849019 protein_coding
  ENSMUST00000121705 Stx4a-002 127841968-127849019 protein_coding
  ENSMUST00000123180 Stx4a-007 127845784-127848498 retained_intron
  ENSMUST00000125861 Stx4a-009 127848391-127849019 retained_intron
  ENSMUST00000138294 Stx4a-006 127842685-127846586 retained_intron
  ENSMUST00000138399 Stx4a-005 127841970-127843944 retained_intron
  ENSMUST00000142849 Stx4a-008 127843598-127848677 retained_intron
  ENSMUST00000152310 Stx4a-003 127824294-127849019 processed_transcript
  ENSMUST00000156537 Stx4a-004 127841978-127846618 nonsense_mediated_decay

Mus musculus EnsemblGRCm38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000033075ENSMUST00000121705ENSMUST00000125861ENSMUST00000142849ENSMUST00000156537
Transcript ID Adipose Adrenal Bladder Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000033075 23.300±1.66 12.029±3.30 33.891±3.94 18.995±0.35 17.467±4.57 22.622±1.60 16.589±2.25 14.273±3.24 20.607±1.38 23.222±2.91 14.614±3.78 26.331±4.51 4.025±1.50
ENSMUST00000121705 13.841±1.06 13.313±2.69 18.431±3.98 12.666±0.80 10.992±1.87 9.284±2.59 5.956±1.48 7.742±1.92 12.964±1.04 8.947±1.31 15.494±3.59 18.429±7.10 2.814±0.45
ENSMUST00000125861 N/A 20.856±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000142849 N/A N/A 27.638±7.39 N/A N/A N/A N/A N/A N/A N/A 33.720±12.38 46.247±13.21 7.873±0.00
ENSMUST00000156537 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 19.010±0.00 N/A 3.538±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001X8 CIL_0001X8_0002 CGP 7:127785608-127824549
CIL_0001XW CIL_0001XW_0002 CGP 7:127803900-127849019
CIL_0001UH CIL_0001UH_0002 CGP 7:127824294-127876828

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000149 IPI SNARE binding
GO:0005484 IEA SNAP receptor activity
GO:0005515 IPI protein binding
GO:0005737 IDA cytoplasm
GO:0005802 IDA trans-Golgi network
GO:0005886 IDA plasma membrane
GO:0006886 IEA intracellular protein transport
GO:0009986 IDA cell surface
GO:0016021 IEA integral component of membrane
GO:0016079 TAS synaptic vesicle exocytosis
GO:0016323 IDA basolateral plasma membrane
GO:0031201 ISS SNARE complex
GO:0035493 IDA SNARE complex assembly
GO:0035749 IDA myelin sheath adaxonal region
GO:0042581 IEA specific granule
GO:0043219 IDA lateral loop
GO:0048471 IDA perinuclear region of cytoplasm
GO:0070062 IEA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000052518 stx4 syntaxin 4 protein_coding Danio_rerio
ENSG00000103496 STX4 syntaxin 4 protein_coding Homo_sapiens

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