C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: syntaxin 4
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000394998 STX4-003 ENSG00000103496 9606 + 16:31033095-31040163 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; KidneyENST00000394998
Transcript ID Kidney
ENST00000394998 0.408±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001XW CIL_0001XW_0001 CGP 16:30989256-31042975
CIL_0001UH CIL_0001UH_0001 CGP 16:31032889-31074320

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005484 IEA SNAP receptor activity
GO:0005515 IPI:IEA protein binding
GO:0005773 TAS vacuole
GO:0005829 TAS cytosol
GO:0005886 IDA plasma membrane
GO:0006836 IEA neurotransmitter transport
GO:0006886 IEA intracellular protein transport
GO:0006892 TAS post-Golgi vesicle-mediated transport
GO:0007596 TAS blood coagulation
GO:0009986 IDA cell surface
GO:0016020 TAS:IEA membrane
GO:0016021 IEA integral component of membrane
GO:0016192 IEA vesicle-mediated transport
GO:0016323 IDA basolateral plasma membrane
GO:0030168 TAS platelet activation
GO:0031201 IDA SNARE complex
GO:0042581 IDA specific granule
GO:0061024 TAS membrane organization
GO:0070062 IDA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000033075 Stx4a-001 protein_coding Mus_musculus 0 965
ENSMUST00000121705 Stx4a-002 protein_coding Mus_musculus 0 939
ENSMUST00000156537 Stx4a-004 nonsense_mediated_decay Mus_musculus 0 809
ENSMUST00000142849 Stx4a-008 retained_intron Mus_musculus 0 616
ENSMUST00000123180 Stx4a-007 retained_intron Mus_musculus 0 403
ENSMUST00000152310 Stx4a-003 processed_transcript Mus_musculus 0 339
ENSMUST00000138294 Stx4a-006 retained_intron Mus_musculus 0 337
ENSMUST00000138399 Stx4a-005 retained_intron Mus_musculus 0 320

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