C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: SUB1 homolog (S. cerevisiae)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000265073 SUB1-001 ENSG00000113387 9606 + 5:32585499-32604079 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000265073
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000265073 6.940±0.00 10.061±0.00 2.547±0.00 35.035±3.14 14.174±2.50 7.644±0.48 8.141±0.98 5.717±1.64 7.082±3.93 7.013±0.57 4.591±0.78 10.783±1.64 7.487±2.80 8.076±1.53

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002SE CIL_0002SE_0002 CGP 5:32354350-32604079
CIL_000211 CIL_000211_0002 CGP 5:32531633-32791724

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001205 IEA RNA polymerase II distal enhancer sequence-specific DNA binding transcription factor activity involved in positive regulation of transcription
GO:0003677 IEA DNA binding
GO:0003697 IDA single-stranded DNA binding
GO:0003713 IDA:IEA transcription coactivator activity
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005667 IDA transcription factor complex
GO:0005730 IDA nucleolus
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0006357 IDA regulation of transcription from RNA polymerase II promoter
GO:0044822 IDA poly(A) RNA binding
GO:0045944 IEA positive regulation of transcription from RNA polymerase II promoter
GO:0060395 IEA SMAD protein signal transduction
GO:0070062 IDA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000022816 Sub1-001 protein_coding Mus_musculus 0 702
ENSMUST00000110504 Sub1-002 protein_coding Mus_musculus 0 608
ENSMUST00000121603 Gm2986-001 processed_pseudogene Mus_musculus 0 387
ENSMUST00000120656 Gm14620-001 processed_pseudogene Mus_musculus 0 379
ENSMUST00000129533 Sub1-004 retained_intron Mus_musculus 0 368
ENSMUST00000134414 Sub1-003 processed_transcript Mus_musculus 0 361

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