C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: SUB1 homolog (S. cerevisiae)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000511615 SUB1-004 ENSG00000113387 9606 + 5:32585559-32601988 nonsense_mediated_decay

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderColonKidneyOvaryPlacentaTestisENST00000511615
Transcript ID Adipose Adrenal Bladder Colon Kidney Ovary Placenta Testis
ENST00000511615 4.853±0.00 9.669±0.00 1.598±0.00 5.423±0.00 3.447±0.00 18.024±6.97 6.967±1.66 9.628±1.03

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002SE CIL_0002SE_0002 CGP 5:32354350-32604079
CIL_000211 CIL_000211_0002 CGP 5:32531633-32791724

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000022816 Sub1-001 protein_coding Mus_musculus 0 462
ENSMUST00000110504 Sub1-002 protein_coding Mus_musculus 0 385
ENSMUST00000129533 Sub1-004 retained_intron Mus_musculus 0 235
ENSMUST00000134414 Sub1-003 processed_transcript Mus_musculus 0 228
ENSMUST00000120656 Gm14620-001 processed_pseudogene Mus_musculus 0 193
ENSMUST00000121603 Gm2986-001 processed_pseudogene Mus_musculus 0 191

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