C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info

Description: nucleolin
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000461347 NCL-002 ENSG00000115053 9606 - 2:231454908-231483641 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; HeartPlacentaENST00000461347
Transcript ID Heart Placenta
ENST00000461347 0.590±0.00 90.269±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000899 CIL_000899_0001 VISTA 2:231361987-231963495
CIL_0007WD CIL_0007WD_0001 VISTA 2:231362545-231967398
CIL_0004KZ CIL_0004KZ_0002 CGP 2:231395543-231483641
CIL_00076N CIL_00076N_0001 CGP 2:231453531-231530495

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000027438 Ncl-001 protein_coding Mus_musculus 0 1253
ENSMUST00000185676 Ncl-002 retained_intron Mus_musculus 0 1020
ENSMUST00000186050 Ncl-005 retained_intron Mus_musculus 0 595
ENSMUST00000186435 RP24-108N24.2-001 processed_pseudogene Mus_musculus 0 521
ENSMUST00000188682 Ncl-006 retained_intron Mus_musculus 0 505
ENSMUST00000185785 Ncl-003 protein_coding Mus_musculus 0 287
ENSMUST00000119030 Gm12020-001 processed_pseudogene Mus_musculus 0 279
ENSMUST00000189504 Ncl-004 retained_intron Mus_musculus 0 268
ENSDART00000132181 armc9-001 protein_coding Danio_rerio 0.0000008 60
ENSDART00000139112 armc9-002 processed_transcript Danio_rerio 0.0000002 60
ENSDART00000125991 armc9-201 protein_coding Danio_rerio 0.0000006 60

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