C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: nucleolin
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000322723 NCL-001 ENSG00000115053 9606 - 2:231453531-231464594 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000322723
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000322723 12.811±0.00 25.364±0.00 6.608±0.00 8.982±7.74 8.460±4.74 9.727±5.79 2.063±0.00 7.180±4.24 6.895±1.63 6.133±4.35 7.645±5.62 28.267±21.69 38.242±38.47 18.891±1.73

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000899 CIL_000899_0001 VISTA 2:231361987-231963495
CIL_0007WD CIL_0007WD_0001 VISTA 2:231362545-231967398
CIL_0004KZ CIL_0004KZ_0002 CGP 2:231395543-231483641
CIL_00076N CIL_00076N_0001 CGP 2:231453531-231530495

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0001525 IDA angiogenesis
GO:0003676 IEA nucleic acid binding
GO:0003723 IDA RNA binding
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005654 IEA nucleoplasm
GO:0005730 IDA nucleolus
GO:0005938 IDA cell cortex
GO:0008022 IPI protein C-terminus binding
GO:0016020 IDA membrane
GO:0030529 IDA ribonucleoprotein complex
GO:0036464 IDA cytoplasmic ribonucleoprotein granule
GO:0042162 IDA telomeric DNA binding
GO:0042802 IPI identical protein binding
GO:0044822 IDA poly(A) RNA binding
GO:0070062 IDA extracellular vesicular exosome
GO:1901838 IMP positive regulation of transcription of nuclear large rRNA transcript from RNA polymerase I promoter

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000027438 Ncl-001 protein_coding Mus_musculus 0 2320
ENSMUST00000185676 Ncl-002 retained_intron Mus_musculus 0 1336
ENSMUST00000186435 RP24-108N24.2-001 processed_pseudogene Mus_musculus 0 625
ENSMUST00000186050 Ncl-005 retained_intron Mus_musculus 0 595
ENSMUST00000188682 Ncl-006 retained_intron Mus_musculus 0 505
ENSMUST00000185785 Ncl-003 protein_coding Mus_musculus 0 287
ENSMUST00000119030 Gm12020-001 processed_pseudogene Mus_musculus 0 279
ENSMUST00000189504 Ncl-004 retained_intron Mus_musculus 0 268
ENSMUST00000030474 Nsun4-002 nonsense_mediated_decay Mus_musculus 0.0003 53
ENSDART00000132181 armc9-001 protein_coding Danio_rerio 0.0000008 60
ENSDART00000139112 armc9-002 processed_transcript Danio_rerio 0.0000002 60
ENSDART00000125991 armc9-201 protein_coding Danio_rerio 0.0000006 60

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