C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: small nuclear ribonucleoprotein polypeptide C
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000374018 SNRPC-003 ENSG00000124562 9606 + 6:34757525-34773714 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000374018
Transcript ID Adipose Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000374018 3.394±0.00 8.121±0.00 5.730±3.73 16.167±0.00 17.104±0.00 9.853±0.00 3.596±0.00 5.506±3.51 5.269±0.00 29.185±17.56 52.896±2.16 11.251±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000258 CIL_000258_0001 CGP 6:34587288-34773794
CIL_000259 CIL_000259_0001 CGP 6:34757406-34883138

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000387 IEA spliceosomal snRNP assembly
GO:0005685 IEA U1 snRNP

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000071006 Snrpc-001 protein_coding Mus_musculus 0 562
ENSMUST00000173338 Gm2991-001 processed_pseudogene Mus_musculus 0 521
ENSMUST00000175770 Gm8974-001 processed_pseudogene Mus_musculus 0 503
ENSMUST00000058951 Gm8849-201 pseudogene Mus_musculus 0 490
ENSMUST00000189108 RP24-554B1.8-001 processed_pseudogene Mus_musculus 0 470
ENSMUST00000137581 Snrpc-002 retained_intron Mus_musculus 0 416
ENSMUST00000191160 RP23-298I7.3-001 processed_pseudogene Mus_musculus 0 350
ENSMUST00000120976 Snrp1c-ps2-001 processed_pseudogene Mus_musculus 0 305
ENSMUST00000121668 Gm13555-001 processed_pseudogene Mus_musculus 0 263

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