C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: small nuclear ribonucleoprotein polypeptide C
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000244520 SNRPC-001 ENSG00000124562 9606 + 6:34757406-34773794 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000244520
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000244520 17.711±0.00 40.440±0.00 2.299±0.00 15.239±6.49 12.589±5.86 11.041±2.64 25.564±12.81 16.740±3.82 15.352±9.82 10.634±6.58 22.046±8.80 36.853±15.39 45.852±12.61 48.170±10.82

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000258 CIL_000258_0001 CGP 6:34587288-34773794
CIL_000259 CIL_000259_0001 CGP 6:34757406-34883138

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000243 IEA commitment complex
GO:0000387 IEA:IDA spliceosomal snRNP assembly
GO:0000395 IEA mRNA 5'-splice site recognition
GO:0000398 IDA:IEA mRNA splicing, via spliceosome
GO:0003676 IEA nucleic acid binding
GO:0003727 IDA single-stranded RNA binding
GO:0003729 IEA mRNA binding
GO:0005515 IPI protein binding
GO:0005634 IDA:IEA nucleus
GO:0005685 IEA:IDA U1 snRNP
GO:0008270 IDA:IEA zinc ion binding
GO:0015030 IDA Cajal body
GO:0042803 IPI protein homodimerization activity
GO:0044822 IDA poly(A) RNA binding
GO:0071004 IEA U2-type prespliceosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000071006 Snrpc-001 protein_coding Mus_musculus 0 693
ENSMUST00000173338 Gm2991-001 processed_pseudogene Mus_musculus 0 577
ENSMUST00000175770 Gm8974-001 processed_pseudogene Mus_musculus 0 564
ENSMUST00000058951 Gm8849-201 pseudogene Mus_musculus 0 556
ENSMUST00000189108 RP24-554B1.8-001 processed_pseudogene Mus_musculus 0 510
ENSMUST00000137581 Snrpc-002 retained_intron Mus_musculus 0 414
ENSMUST00000191160 RP23-298I7.3-001 processed_pseudogene Mus_musculus 0 375
ENSMUST00000120976 Snrp1c-ps2-001 processed_pseudogene Mus_musculus 0 350
ENSMUST00000121668 Gm13555-001 processed_pseudogene Mus_musculus 0 274

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