C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: small nuclear ribonucleoprotein polypeptide C
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000374017 SNRPC-002 ENSG00000124562 9606 + 6:34757554-34773794 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderLiverENST00000374017
Transcript ID Bladder Liver
ENST00000374017 1.390±0.00 0.824±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000258 CIL_000258_0001 CGP 6:34587288-34773794
CIL_000259 CIL_000259_0001 CGP 6:34757406-34883138

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000387 IEA spliceosomal snRNP assembly
GO:0000398 IEA mRNA splicing, via spliceosome
GO:0003676 IEA nucleic acid binding
GO:0005634 IEA nucleus
GO:0005685 IEA U1 snRNP
GO:0008270 IEA zinc ion binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000071006 Snrpc-001 protein_coding Mus_musculus 0 645
ENSMUST00000173338 Gm2991-001 processed_pseudogene Mus_musculus 0 562
ENSMUST00000175770 Gm8974-001 processed_pseudogene Mus_musculus 0 549
ENSMUST00000058951 Gm8849-201 pseudogene Mus_musculus 0 542
ENSMUST00000189108 RP24-554B1.8-001 processed_pseudogene Mus_musculus 0 505
ENSMUST00000137581 Snrpc-002 retained_intron Mus_musculus 0 414
ENSMUST00000191160 RP23-298I7.3-001 processed_pseudogene Mus_musculus 0 374
ENSMUST00000120976 Snrp1c-ps2-001 processed_pseudogene Mus_musculus 0 346
ENSMUST00000121668 Gm13555-001 processed_pseudogene Mus_musculus 0 274

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