C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: keratin 17
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000128422 KRT17 9606 - 17:41619437-41624842 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000311208 KRT17-001 41619437-41624577 protein_coding
  ENST00000463128 KRT17-002 41621026-41624842 protein_coding
  ENST00000491673 KRT17-004 41622873-41624575 retained_intron
  ENST00000493253 KRT17-003 41619446-41624296 retained_intron
  ENST00000540235 KRT17-201 41619443-41624541 protein_coding
  ENST00000577817 KRT17-005 41621627-41624464 protein_coding
  ENST00000590038 KRT17-006 41621662-41623268 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBreastColonHeartKidneyLiverLungOvaryPlacentaENST00000311208ENST00000463128ENST00000491673ENST00000493253ENST00000540235ENST00000577817
Transcript ID Adipose Adrenal Bladder Breast Colon Heart Kidney Liver Lung Ovary Placenta
ENST00000311208 N/A N/A N/A 15.520±7.27 N/A 0.077±0.00 N/A N/A 3.998±3.56 131.109±178.58 33.607±7.94
ENST00000463128 N/A N/A N/A 3.034±0.00 N/A N/A N/A N/A 0.522±0.00 260.966±236.17 47.011±0.00
ENST00000491673 N/A N/A 0.053±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000493253 N/A 0.050±0.00 N/A 12.014±0.00 N/A 0.067±0.00 N/A 0.886±0.00 0.837±0.00 N/A N/A
ENST00000540235 0.985±0.00 N/A N/A 51.345±0.00 0.483±0.41 0.073±0.00 0.158±0.00 N/A 8.888±8.40 N/A N/A
ENST00000577817 N/A N/A 0.124±0.00 N/A N/A N/A N/A N/A N/A 15.320±0.00 N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00056U CIL_00056U_000M CGP 17:41609778-41624842
CIL_0000TT CIL_0000TT_0002 CGP 17:41619437-41692668

Gene Ontology
GO IDEvidence TypeGO Description
GO:0002009 IEA morphogenesis of an epithelium
GO:0005198 IEA structural molecule activity
GO:0005200 TAS structural constituent of cytoskeleton
GO:0005515 IPI protein binding
GO:0005737 IEA cytoplasm
GO:0005882 IEA intermediate filament
GO:0007165 IMP signal transduction
GO:0008544 TAS epidermis development
GO:0030307 IEA positive regulation of cell growth
GO:0031424 IEA keratinization
GO:0032395 IDA MHC class II receptor activity
GO:0042289 IPI MHC class II protein binding
GO:0045109 IEA intermediate filament organization
GO:0045727 IEA positive regulation of translation
GO:0051798 IEA positive regulation of hair follicle development
GO:0070062 IDA extracellular vesicular exosome
GO:0071944 IEA cell periphery

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000000212 zgc:92061 zgc:92061 protein_coding Danio_rerio
ENSDARG00000014356 zgc:92035 zgc:92035 protein_coding Danio_rerio
ENSDARG00000022334 BX469912.1 Uncharacterized protein protein_coding Danio_rerio
ENSDARG00000023082 krt1-19d keratin, type 1, gene 19d protein_coding Danio_rerio
ENSDARG00000036832 cyt1l type I cytokeratin, enveloping layer, like protein_coding Danio_rerio
ENSDARG00000036834 zgc:109868 zgc:109868 protein_coding Danio_rerio
ENSDARG00000036840 krt15 keratin 15 protein_coding Danio_rerio
ENSDARG00000044975 zgc:153629 zgc:153629 protein_coding Danio_rerio
ENSDARG00000044976 zgc:136902 zgc:136902 protein_coding Danio_rerio
ENSDARG00000090268 si:dkeyp-113d7.4 si:dkeyp-113d7.4 protein_coding Danio_rerio
ENSDARG00000092947 cyt1 type I cytokeratin, enveloping layer protein_coding Danio_rerio
ENSDARG00000094041 krt17 keratin 17 protein_coding Danio_rerio
ENSDARG00000095147 wu:fb17f05 wu:fb17f05 protein_coding Danio_rerio
ENSMUSG00000035557 Krt17 keratin 17 protein_coding Mus_musculus

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