C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: keratin 17
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000311208 KRT17-001 ENSG00000128422 9606 - 17:41619437-41624577 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BreastHeartLungOvaryPlacentaENST00000311208
Transcript ID Breast Heart Lung Ovary Placenta
ENST00000311208 15.520±7.27 0.077±0.00 3.998±3.56 131.109±178.58 33.607±7.94

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00056U CIL_00056U_000M CGP 17:41609778-41624842
CIL_0000TT CIL_0000TT_0002 CGP 17:41619437-41692668

Gene Ontology

GO IDEvidence TypeGO Description
GO:0002009 IEA morphogenesis of an epithelium
GO:0005198 IEA structural molecule activity
GO:0005200 TAS structural constituent of cytoskeleton
GO:0005515 IPI protein binding
GO:0005737 IEA cytoplasm
GO:0005882 IEA intermediate filament
GO:0007165 IMP signal transduction
GO:0008544 TAS epidermis development
GO:0030307 IEA positive regulation of cell growth
GO:0031424 IEA keratinization
GO:0032395 IDA MHC class II receptor activity
GO:0042289 IPI MHC class II protein binding
GO:0045109 IEA intermediate filament organization
GO:0045727 IEA positive regulation of translation
GO:0051798 IEA positive regulation of hair follicle development
GO:0070062 IDA extracellular vesicular exosome
GO:0071944 IEA cell periphery

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000080893 Krt17-001 protein_coding Mus_musculus 0 1736
ENSMUST00000007272 Krt14-001 protein_coding Mus_musculus 0 1203
ENSMUST00000137265 Krt14-002 processed_transcript Mus_musculus 0 1022
ENSMUST00000017270 Krt42-001 protein_coding Mus_musculus 0 926
ENSMUST00000007280 Krt16-001 protein_coding Mus_musculus 0 756
ENSMUST00000007317 Krt19-001 protein_coding Mus_musculus 0 597
ENSMUST00000121423 Gm11597-001 unprocessed_pseudogene Mus_musculus 0 588
ENSMUST00000107411 Krt15-001 protein_coding Mus_musculus 0 545
ENSMUST00000007275 Krt13-001 protein_coding Mus_musculus 0 510
ENSMUST00000107406 Krt42-002 retained_intron Mus_musculus 0 459
ENSMUST00000126460 Krt19-002 processed_transcript Mus_musculus 0 444
ENSMUST00000148502 Krt15-002 retained_intron Mus_musculus 0 331
ENSMUST00000103131 Krt10-001 protein_coding Mus_musculus 0 315
ENSMUST00000128934 Krt13-002 processed_transcript Mus_musculus 0 248
ENSMUST00000038004 Krt25-001 protein_coding Mus_musculus 0 191
ENSMUST00000100482 Krt26-001 protein_coding Mus_musculus 3.9937e-43 180
ENSMUST00000148770 Krt26-002 processed_transcript Mus_musculus 4e-23 113

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