C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: chimerin 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000128656 CHN1 9606 - 2:174799363-175005369 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000295497 CHN1-002 174799492-174847549 protein_coding
  ENST00000409089 CHN1-012 174801707-174847381 protein_coding
  ENST00000409156 CHN1-003 174799989-175005369 protein_coding
  ENST00000409597 CHN1-014 174799515-174846405 protein_coding
  ENST00000409900 CHN1-001 174799363-175005226 protein_coding
  ENST00000413882 CHN1-013 174808905-174846415 protein_coding
  ENST00000425395 CHN1-008 174811533-175005345 nonsense_mediated_decay
  ENST00000443238 CHN1-010 174808927-174847751 protein_coding
  ENST00000444394 CHN1-011 174801721-174847565 protein_coding
  ENST00000444573 CHN1-015 174812377-174847198 protein_coding
  ENST00000451799 CHN1-005 174915067-175005263 nonsense_mediated_decay
  ENST00000469597 CHN1-006 174877910-175005219 processed_transcript
  ENST00000481174 CHN1-018 174837113-174877941 processed_transcript
  ENST00000485882 CHN1-016 174812098-174846965 retained_intron
  ENST00000488080 CHN1-004 174799495-175005364 processed_transcript
  ENST00000490654 CHN1-007 174846914-174915292 retained_intron
  ENST00000491801 CHN1-017 174810900-174812353 retained_intron
  ENST00000492964 CHN1-009 174799897-174802057 retained_intron

Homo sapiens EnsemblGRCh38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000295497ENST00000409156ENST00000409597ENST00000409900ENST00000444573ENST00000481174ENST00000488080ENST00000490654
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000295497 N/A 3.609±0.00 N/A 138.279±34.36 0.540±0.00 N/A 0.369±0.00 N/A 0.678±0.00 4.626±1.54 0.018±0.00 1.156±0.33 5.180±2.01 N/A
ENST00000409156 N/A N/A N/A N/A N/A 1.767±0.00 0.775±0.17 0.787±0.00 N/A N/A N/A N/A N/A N/A
ENST00000409597 1.694±0.00 7.088±0.00 N/A 141.957±0.00 0.823±0.00 0.950±0.00 1.185±0.00 0.452±0.00 0.114±0.00 4.605±0.00 0.414±0.00 1.728±0.00 4.440±0.00 10.577±0.00
ENST00000409900 N/A 3.894±0.00 N/A N/A 0.921±0.20 1.289±0.00 1.413±0.00 0.210±0.00 0.775±0.00 1.265±0.00 N/A 0.799±0.35 1.874±0.57 6.201±0.00
ENST00000444573 N/A N/A N/A N/A N/A N/A N/A N/A 1.690±0.00 N/A N/A N/A N/A N/A
ENST00000481174 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 2.062±0.00 N/A N/A
ENST00000488080 N/A N/A N/A N/A N/A 1.523±0.00 N/A 1.035±0.00 0.474±0.00 N/A N/A 0.630±0.00 N/A N/A
ENST00000490654 N/A N/A 2.547±0.00 N/A 4.343±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001HC CIL_0001HC_0001 CGP 2:174747592-175005369
CIL_0001HB CIL_0001HB_0001 CGP 2:174799363-175168382

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005070 TAS SH3/SH2 adaptor activity
GO:0005096 IEA GTPase activator activity
GO:0005515 IEA protein binding
GO:0005622 IEA intracellular
GO:0005829 TAS cytosol
GO:0007165 IEA signal transduction
GO:0007264 TAS small GTPase mediated signal transduction
GO:0008045 ISS motor neuron axon guidance
GO:0009967 TAS positive regulation of signal transduction
GO:0032314 IEA regulation of Rac GTPase activity
GO:0035556 IEA intracellular signal transduction
GO:0043547 IEA positive regulation of GTPase activity
GO:0046872 IEA metal ion binding
GO:0046875 IEA ephrin receptor binding
GO:0048013 ISS ephrin receptor signaling pathway
GO:0050770 ISS regulation of axonogenesis
GO:0051056 TAS regulation of small GTPase mediated signal transduction

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000087701 chimerin 1 protein_coding Danio_rerio
ENSMUSG00000056486 Chn1 chimerin 1 protein_coding Mus_musculus

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