C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: chimerin 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000295497 CHN1-002 ENSG00000128656 9606 - 2:174799492-174847549 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBrainBreastHeartLiverLungMuscleOvaryPlacentaENST00000295497
Transcript ID Adrenal Brain Breast Heart Liver Lung Muscle Ovary Placenta
ENST00000295497 3.609±0.00 138.279±34.36 0.540±0.00 0.369±0.00 0.678±0.00 4.626±1.54 0.018±0.00 1.156±0.33 5.180±2.01

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001HC CIL_0001HC_0001 CGP 2:174747592-175005369
CIL_0001HB CIL_0001HB_0001 CGP 2:174799363-175168382

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005070 TAS SH3/SH2 adaptor activity
GO:0005096 IEA GTPase activator activity
GO:0005622 IEA intracellular
GO:0005829 TAS cytosol
GO:0007165 IEA signal transduction
GO:0007264 TAS small GTPase mediated signal transduction
GO:0008045 ISS motor neuron axon guidance
GO:0009967 TAS positive regulation of signal transduction
GO:0035556 IEA intracellular signal transduction
GO:0043547 IEA positive regulation of GTPase activity
GO:0046872 IEA metal ion binding
GO:0048013 ISS ephrin receptor signaling pathway
GO:0050770 ISS regulation of axonogenesis
GO:0051056 TAS regulation of small GTPase mediated signal transduction

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000102677 Chn1-002 protein_coding Mus_musculus 0 1877
ENSMUST00000180045 Chn1-202 protein_coding Mus_musculus 0 1539
ENSMUST00000112024 Chn1-001 protein_coding Mus_musculus 0 1539
ENSMUST00000166199 Chn1-201 protein_coding Mus_musculus 0 1046
ENSMUST00000070579 Chn1-003 protein_coding Mus_musculus 0 1005
ENSMUST00000154258 Chn1-007 protein_coding Mus_musculus 0 610
ENSMUST00000139252 Chn1-004 nonsense_mediated_decay Mus_musculus 0 497
ENSMUST00000124450 Chn1-006 nonsense_mediated_decay Mus_musculus 0 462
ENSMUST00000136953 Chn1-008 protein_coding Mus_musculus 0 422

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