C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: synaptotagmin binding, cytoplasmic RNA interacting protein
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000355238 SYNCRIP-002 ENSG00000135316 9606 - 6:85608329-85642991 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000355238
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000355238 11.629±0.00 10.549±0.00 3.416±0.00 4.976±3.09 7.291±2.40 7.961±2.96 4.475±2.81 8.613±4.64 7.808±2.67 6.955±0.11 5.246±4.57 9.499±1.44 10.564±1.20 10.976±0.64

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007K0 CIL_0007K0_0001 UCNEbase 6:84361462-85614404
CIL_0005XI CIL_0005XI_0001 CGP 6:85505496-85615234
CIL_0005XJ CIL_0005XJ_0001 CGP 6:85557978-85643792
CIL_0006BO CIL_0006BO_0002 CGP 6:85607785-87016683

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0000398 IC mRNA splicing, via spliceosome
GO:0001649 IDA osteoblast differentiation
GO:0003676 IEA nucleic acid binding
GO:0003723 TAS RNA binding
GO:0005515 IPI protein binding
GO:0005634 TAS nucleus
GO:0005783 IEA endoplasmic reticulum
GO:0006396 TAS RNA processing
GO:0008380 TAS RNA splicing
GO:0016020 IDA membrane
GO:0016032 IEA viral process
GO:0017148 IMP negative regulation of translation
GO:0030529 IDA ribonucleoprotein complex
GO:0044822 IDA poly(A) RNA binding
GO:0070934 IMP CRD-mediated mRNA stabilization
GO:0070937 IDA CRD-mediated mRNA stability complex
GO:0071013 IDA catalytic step 2 spliceosome
GO:0071204 ISS histone pre-mRNA 3'end processing complex
GO:0071346 IDA cellular response to interferon-gamma
GO:0097452 IDA GAIT complex

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000069221 Syncrip-001 protein_coding Mus_musculus 0 7657
ENSMUST00000174391 Syncrip-004 protein_coding Mus_musculus 0 7090
ENSMUST00000174282 Syncrip-003 protein_coding Mus_musculus 0 5533
ENSMUST00000174688 Syncrip-007 protein_coding Mus_musculus 0 4034
ENSMUST00000174269 Syncrip-006 protein_coding Mus_musculus 0 3784
ENSMUST00000173801 Syncrip-002 protein_coding Mus_musculus 0 3018
ENSMUST00000172828 Syncrip-005 nonsense_mediated_decay Mus_musculus 0 2850
ENSMUST00000187178 RP24-512H17.5-001 processed_pseudogene Mus_musculus 0 1506
ENSMUST00000174361 Syncrip-008 protein_coding Mus_musculus 0 1493
ENSMUST00000173405 Syncrip-010 protein_coding Mus_musculus 0 1016
ENSDART00000129870 syncrip-201 protein_coding Danio_rerio 0 891
ENSDART00000058779 syncrip-001 protein_coding Danio_rerio 0 891
ENSMUST00000174145 Syncrip-011 retained_intron Mus_musculus 0 632
ENSMUST00000172508 Syncrip-009 protein_coding Mus_musculus 0 627
ENSMUST00000173131 Gm20537-001 nonsense_mediated_decay Mus_musculus 0 604
ENSDART00000132186 syncrip-002 protein_coding Danio_rerio 0 547
ENSMUST00000154586 Gm20537-002 nonsense_mediated_decay Mus_musculus 0 392
ENSMUST00000187770 Syncrip-012 retained_intron Mus_musculus 0 388

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