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C-It-Loci: A knowledge database for tissue-enriched loci.
Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main
Transcript Info |
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| Description: | synaptotagmin binding, cytoplasmic RNA interacting protein | |||||
|---|---|---|---|---|---|---|
| Transcript Accession | Transcript Name | Contained in Gene | Tax ID | Strand | Position | Biotype |
ENST00000444272  |
SYNCRIP-003 |
ENSG00000135316 |
9606 | - |
6:85637078-85643792  |
protein_coding |
|
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Expression PatternsNo expression data. |
Conserved Regions | |||
|---|---|---|---|
| Region ID | Sub-Region | Region Type | Position |
| CIL_0007K0 | CIL_0007K0_0001 | UCNEbase | 6:84361462-85614404 |
| CIL_0005XI | CIL_0005XI_0001 | CGP | 6:85505496-85615234 |
| CIL_0005XJ | CIL_0005XJ_0001 | CGP | 6:85557978-85643792 |
| CIL_0006BO | CIL_0006BO_0002 | CGP | 6:85607785-87016683 |
Gene Ontology | ||
|---|---|---|
| GO ID | Evidence Type | GO Description |
| No GO terms available. | ||
Homologs | |||||
| ENSEMBL Accession | Gene Name | Biotype | Species | E-Value | Bit Score |
|
ENSMUST00000173801
|
Syncrip-002 | protein_coding | Mus_musculus | 0 | 961 |
|
ENSMUST00000174282
|
Syncrip-003 | protein_coding | Mus_musculus | 0 | 961 |
|
ENSMUST00000174269
|
Syncrip-006 | protein_coding | Mus_musculus | 0 | 961 |
|
ENSMUST00000069221
|
Syncrip-001 | protein_coding | Mus_musculus | 0 | 961 |
|
ENSMUST00000173405
|
Syncrip-010 | protein_coding | Mus_musculus | 0 | 959 |
|
ENSMUST00000174688
|
Syncrip-007 | protein_coding | Mus_musculus | 0 | 959 |
|
ENSMUST00000174361
|
Syncrip-008 | protein_coding | Mus_musculus | 0 | 937 |
|
ENSMUST00000187178
|
RP24-512H17.5-001 | processed_pseudogene | Mus_musculus | 0 | 929 |
|
ENSMUST00000174391
|
Syncrip-004 | protein_coding | Mus_musculus | 0 | 673 |
|
ENSMUST00000174145
|
Syncrip-011 | retained_intron | Mus_musculus | 0 | 632 |
|
ENSMUST00000172828
|
Syncrip-005 | nonsense_mediated_decay | Mus_musculus | 0 | 525 |
|
ENSMUST00000172508
|
Syncrip-009 | protein_coding | Mus_musculus | 0 | 521 |
|
ENSDART00000129870
|
syncrip-201 | protein_coding | Danio_rerio | 0 | 390 |
|
ENSDART00000058779
|
syncrip-001 | protein_coding | Danio_rerio | 0 | 390 |
|
ENSMUST00000187770
|
Syncrip-012 | retained_intron | Mus_musculus | 0 | 388 |
|
ENSDART00000132186
|
syncrip-002 | protein_coding | Danio_rerio | 0 | 265 |
