C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: synaptotagmin binding, cytoplasmic RNA interacting protein
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000616122 SYNCRIP-201 ENSG00000135316 9606 - 6:85607785-85642922 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastHeartKidneyLiverLungMuscleOvaryENST00000616122
Transcript ID Adipose Adrenal Brain Breast Heart Kidney Liver Lung Muscle Ovary
ENST00000616122 3.132±0.00 3.844±0.00 2.693±0.00 3.383±0.00 0.855±0.00 2.489±0.00 4.791±0.00 2.168±0.00 1.857±0.00 5.843±1.17

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007K0 CIL_0007K0_0001 UCNEbase 6:84361462-85614404
CIL_0005XI CIL_0005XI_0001 CGP 6:85505496-85615234
CIL_0005XJ CIL_0005XJ_0001 CGP 6:85557978-85643792
CIL_0006BO CIL_0006BO_0002 CGP 6:85607785-87016683

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003676 IEA nucleic acid binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000174391 Syncrip-004 protein_coding Mus_musculus 0 7252
ENSMUST00000069221 Syncrip-001 protein_coding Mus_musculus 0 7090
ENSMUST00000174282 Syncrip-003 protein_coding Mus_musculus 0 5053
ENSMUST00000174688 Syncrip-007 protein_coding Mus_musculus 0 4034
ENSMUST00000174269 Syncrip-006 protein_coding Mus_musculus 0 3784
ENSMUST00000172828 Syncrip-005 nonsense_mediated_decay Mus_musculus 0 2953
ENSMUST00000173801 Syncrip-002 protein_coding Mus_musculus 0 2451
ENSMUST00000187178 RP24-512H17.5-001 processed_pseudogene Mus_musculus 0 1242
ENSMUST00000174361 Syncrip-008 protein_coding Mus_musculus 0 1229
ENSDART00000129870 syncrip-201 protein_coding Danio_rerio 0 761
ENSDART00000058779 syncrip-001 protein_coding Danio_rerio 0 761
ENSMUST00000173405 Syncrip-010 protein_coding Mus_musculus 0 730
ENSMUST00000173131 Gm20537-001 nonsense_mediated_decay Mus_musculus 0 604
ENSDART00000132186 syncrip-002 protein_coding Danio_rerio 0 545
ENSMUST00000154586 Gm20537-002 nonsense_mediated_decay Mus_musculus 0 392
ENSMUST00000187770 Syncrip-012 retained_intron Mus_musculus 0 387
ENSMUST00000174145 Syncrip-011 retained_intron Mus_musculus 0 385
ENSMUST00000172508 Syncrip-009 protein_coding Mus_musculus 0 233

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