C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: Sjogren syndrome antigen B (autoantigen La)
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000138385 SSB 9606 + 2:169791933-169812064 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000260956 SSB-001 169798812-169812064 protein_coding
  ENST00000409333 SSB-003 169799279-169812064 protein_coding
  ENST00000413002 SSB-006 169798879-169806890 nonsense_mediated_decay
  ENST00000417292 SSB-005 169798879-169807030 protein_coding
  ENST00000422006 SSB-004 169791933-169807071 protein_coding
  ENST00000461708 SSB-007 169798880-169806007 retained_intron
  ENST00000465871 SSB-010 169806836-169808666 retained_intron
  ENST00000468600 SSB-008 169805744-169806978 retained_intron
  ENST00000470621 SSB-013 169808477-169810602 retained_intron
  ENST00000474273 SSB-009 169806581-169810411 retained_intron
  ENST00000490914 SSB-011 169808477-169811044 retained_intron
  ENST00000494051 SSB-012 169810063-169810888 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungOvaryPlacentaTestisENST00000260956ENST00000461708
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Ovary Placenta Testis
ENST00000260956 17.672±0.00 37.731±0.00 3.795±0.00 13.594±2.63 14.031±4.19 14.745±7.58 0.900±0.00 11.164±5.54 5.006±0.50 6.340±1.94 70.160±67.73 28.182±23.47 35.002±6.67
ENST00000461708 N/A N/A N/A N/A N/A N/A 4.078±0.00 N/A 13.684±0.00 9.501±0.00 N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004SC CIL_0004SC_0001 CGP 2:169694488-169812064
CIL_0007VY CIL_0007VY_0001 VISTA 2:169713097-170314655
CIL_0004SJ CIL_0004SJ_0001 CGP 2:169791933-169824931

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000049 TAS tRNA binding
GO:0000166 IEA nucleotide binding
GO:0003676 IEA nucleic acid binding
GO:0003723 IEA RNA binding
GO:0003729 TAS mRNA binding
GO:0005515 IPI protein binding
GO:0005634 IEA nucleus
GO:0006396 IEA RNA processing
GO:0006400 TAS tRNA modification
GO:0008334 TAS histone mRNA metabolic process
GO:0030529 IEA ribonucleoprotein complex
GO:0044822 IDA poly(A) RNA binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000029252 ssb Sjogren syndrome antigen B (autoantigen La) protein_coding Danio_rerio
ENSMUSG00000068882 Ssb Sjogren syndrome antigen B protein_coding Mus_musculus

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