C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info

Description: Sjogren syndrome antigen B (autoantigen La)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000461708 SSB-007 ENSG00000138385 9606 + 2:169798880-169806007 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; HeartLiverLungENST00000461708
Transcript ID Heart Liver Lung
ENST00000461708 4.078±0.00 13.684±0.00 9.501±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004SC CIL_0004SC_0001 CGP 2:169694488-169812064
CIL_0007VY CIL_0007VY_0001 VISTA 2:169713097-170314655
CIL_0004SJ CIL_0004SJ_0001 CGP 2:169791933-169824931

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000166411 Ssb-201 protein_coding Mus_musculus 0 479
ENSMUST00000112260 Ssb-003 protein_coding Mus_musculus 0 479
ENSMUST00000132186 Ssb-002 nonsense_mediated_decay Mus_musculus 0 479
ENSMUST00000090852 Ssb-001 protein_coding Mus_musculus 0 479
ENSMUST00000156057 Ssb-004 processed_transcript Mus_musculus 0 412

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