C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0004SJ_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000138385-ENSG00000138382 CGP 9606 2:169791933-169824931
GeneTranscriptPositionBiotype
ENSG00000138385 (SSB)
Sjogren syndrome antigen B (autoantigen La) 		ENST00000260956 (SSB-001) 169798812-169812064 protein_coding
ENST00000409333 (SSB-003) 169799279-169812064 protein_coding
ENST00000413002 (SSB-006) 169798879-169806890 nonsense_mediated_decay
ENST00000417292 (SSB-005) 169798879-169807030 protein_coding
ENST00000422006 (SSB-004) 169791933-169807071 protein_coding
ENST00000461708 (SSB-007) 169798880-169806007 retained_intron
ENST00000465871 (SSB-010) 169806836-169808666 retained_intron
ENST00000468600 (SSB-008) 169805744-169806978 retained_intron
ENST00000470621 (SSB-013) 169808477-169810602 retained_intron
ENST00000474273 (SSB-009) 169806581-169810411 retained_intron
ENST00000490914 (SSB-011) 169808477-169811044 retained_intron
ENST00000494051 (SSB-012) 169810063-169810888 retained_intron
CIL_0004SJ_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000068882-ENSMUSG00000051730 CGP 10090 2:69861562-69885615
GeneTranscriptPositionBiotype
ENSMUSG00000051730 (Mettl5)
methyltransferase like 5 		ENSMUST00000060447 (Mettl5-001) 69871198-69885615 protein_coding
ENSMUST00000135459 (Mettl5-004) 69871218-69874050 retained_intron
ENSMUST00000135487 (Mettl5-003) 69877748-69885604 retained_intron
ENSMUST00000142127 (Mettl5-002) 69871214-69885597 nonsense_mediated_decay
ENSMUSG00000068882 (Ssb)
Sjogren syndrome antigen B 		ENSMUST00000090852 (Ssb-001) 69861562-69871786 protein_coding
ENSMUST00000112260 (Ssb-003) 69861686-69867552 protein_coding
ENSMUST00000132186 (Ssb-002) 69861623-69871510 nonsense_mediated_decay
ENSMUST00000132603 (Ssb-005) 69868779-69871510 protein_coding
ENSMUST00000156057 (Ssb-004) 69863291-69869150 processed_transcript
ENSMUST00000166411 (Ssb-201) 69861562-69871846 protein_coding

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0004SJ_0001ENSG00000138385ENST00000260956ENST00000409333ENST00000413002ENST00000417292ENST00000422006ENST00000461708ENST00000465871ENST00000468600ENST00000470621ENST00000474273ENST00000490914ENST00000494051CIL_0004SJ_0002ENSMUSG00000051730ENSMUST00000060447ENSMUST00000135459ENSMUST00000135487ENSMUST00000142127ENSMUSG00000068882ENSMUST00000090852ENSMUST00000112260ENSMUST00000132186ENSMUST00000132603ENSMUST00000156057ENSMUST00000166411
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0004SJ_0001ENSG00000138385ENST00000260956ENST00000461708CIL_0004SJ_0002ENSMUSG00000051730ENSMUST00000060447ENSMUST00000135487ENSMUST00000142127ENSMUSG00000068882ENSMUST00000090852ENSMUST00000112260ENSMUST00000132186ENSMUST00000132603ENSMUST00000156057ENSMUST00000166411
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000138385 ENST00000260956 17.672±0.00 37.731±0.00 3.795±0.00 13.594±2.63 14.031±4.19 14.745±7.58 0.900±0.00 11.164±5.54 5.006±0.50 6.340±1.94 N/A 70.160±67.73 28.182±23.47 35.002±6.67
ENST00000409333 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000413002 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000417292 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000422006 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000461708 N/A N/A N/A N/A N/A N/A 4.078±0.00 N/A 13.684±0.00 9.501±0.00 N/A N/A N/A N/A
ENST00000465871 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000468600 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000470621 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000474273 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000490914 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000494051 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000051730 ENSMUST00000060447 2.363±0.00 3.190±0.67 N/A N/A 4.596±0.00 3.992±1.13 2.210±0.31 2.053±0.35 2.230±0.66 2.079±0.00 8.030±0.65 1.344±0.00 N/A N/A
ENSMUST00000135459 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000135487 1.266±0.14 1.337±0.00 N/A N/A 1.164±0.31 N/A 0.911±0.53 0.616±0.15 0.735±0.07 1.025±0.35 N/A 0.867±0.43 N/A 0.908±0.19
ENSMUST00000142127 N/A 23.057±2.87 N/A N/A 5.465±1.93 7.836±3.45 2.924±0.19 4.266±1.13 5.678±2.03 3.420±1.50 N/A 8.264±1.88 N/A N/A
ENSMUSG00000068882 ENSMUST00000090852 2.791±0.35 N/A 28.736±1.91 26.224±2.94 N/A 2.311±0.40 2.370±0.58 3.266±1.15 18.102±21.60 3.429±1.60 10.642±2.44 15.007±10.15 18.120±5.47 3.179±0.79
ENSMUST00000112260 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 57.960±6.01 47.114±2.30 N/A
ENSMUST00000132186 N/A N/A 18.156±2.20 21.255±8.52 N/A N/A 1.610±0.00 1.956±0.82 21.288±13.74 N/A 4.376±0.80 N/A 23.450±10.58 19.284±0.00
ENSMUST00000132603 N/A N/A N/A 56.302±0.00 N/A N/A N/A N/A 32.004±14.97 N/A 5.825±0.00 78.442±32.80 67.330±59.09 39.884±0.00
ENSMUST00000156057 N/A N/A N/A N/A 4.333±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000166411 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.560±0.00 N/A N/A

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