C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: Sjogren syndrome antigen B
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000068882 Ssb 10090 + 2:69861562-69871846 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000090852 Ssb-001 69861562-69871786 protein_coding
  ENSMUST00000112260 Ssb-003 69861686-69867552 protein_coding
  ENSMUST00000132186 Ssb-002 69861623-69871510 nonsense_mediated_decay
  ENSMUST00000132603 Ssb-005 69868779-69871510 protein_coding
  ENSMUST00000156057 Ssb-004 69863291-69869150 processed_transcript
  ENSMUST00000166411 Ssb-201 69861562-69871846 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000090852ENSMUST00000112260ENSMUST00000132186ENSMUST00000132603ENSMUST00000156057ENSMUST00000166411
Transcript ID Adipose Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000090852 2.791±0.35 28.736±1.91 26.224±2.94 N/A 2.311±0.40 2.370±0.58 3.266±1.15 18.102±21.60 3.429±1.60 10.642±2.44 15.007±10.15 18.120±5.47 3.179±0.79
ENSMUST00000112260 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 57.960±6.01 47.114±2.30 N/A
ENSMUST00000132186 N/A 18.156±2.20 21.255±8.52 N/A N/A 1.610±0.00 1.956±0.82 21.288±13.74 N/A 4.376±0.80 N/A 23.450±10.58 19.284±0.00
ENSMUST00000132603 N/A N/A 56.302±0.00 N/A N/A N/A N/A 32.004±14.97 N/A 5.825±0.00 78.442±32.80 67.330±59.09 39.884±0.00
ENSMUST00000156057 N/A N/A N/A 4.333±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000166411 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.560±0.00 N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007VY CIL_0007VY_0002 VISTA 2:69698509-70299848
CIL_0004SC CIL_0004SC_0002 CGP 2:69821944-69871846
CIL_0004SJ CIL_0004SJ_0002 CGP 2:69861562-69885615

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0003723 IDA RNA binding
GO:0005515 IEA protein binding
GO:0005634 IDA nucleus
GO:0006396 IEA RNA processing
GO:0030529 IEA ribonucleoprotein complex
GO:0044822 IEA poly(A) RNA binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000029252 ssb Sjogren syndrome antigen B (autoantigen La) protein_coding Danio_rerio
ENSG00000138385 SSB Sjogren syndrome antigen B (autoantigen La) protein_coding Homo_sapiens

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