C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: Sjogren syndrome antigen B (autoantigen La)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000409333 SSB-003 ENSG00000138385 9606 + 2:169799279-169812064 protein_coding

Expression Patterns

No expression data.

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004SC CIL_0004SC_0001 CGP 2:169694488-169812064
CIL_0007VY CIL_0007VY_0001 VISTA 2:169713097-170314655
CIL_0004SJ CIL_0004SJ_0001 CGP 2:169791933-169824931

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000049 TAS tRNA binding
GO:0000166 IEA nucleotide binding
GO:0003676 IEA nucleic acid binding
GO:0003723 IEA RNA binding
GO:0003729 TAS mRNA binding
GO:0005515 IPI protein binding
GO:0005634 IEA nucleus
GO:0006396 IEA RNA processing
GO:0006400 TAS tRNA modification
GO:0008334 TAS histone mRNA metabolic process
GO:0030529 IEA ribonucleoprotein complex
GO:0044822 IDA poly(A) RNA binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000166411 Ssb-201 protein_coding Mus_musculus 0 1175
ENSMUST00000090852 Ssb-001 protein_coding Mus_musculus 0 1175
ENSMUST00000112260 Ssb-003 protein_coding Mus_musculus 0 697
ENSMUST00000132186 Ssb-002 nonsense_mediated_decay Mus_musculus 0 599
ENSMUST00000156057 Ssb-004 processed_transcript Mus_musculus 0 536
ENSMUST00000132603 Ssb-005 protein_coding Mus_musculus 0 479

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