C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0004SC_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000213160-ENSG00000138385 CGP 9606 2:169694488-169812064
GeneTranscriptPositionBiotype
ENSG00000138385 (SSB)
Sjogren syndrome antigen B (autoantigen La) 		ENST00000260956 (SSB-001) 169798812-169812064 protein_coding
ENST00000409333 (SSB-003) 169799279-169812064 protein_coding
ENST00000413002 (SSB-006) 169798879-169806890 nonsense_mediated_decay
ENST00000417292 (SSB-005) 169798879-169807030 protein_coding
ENST00000422006 (SSB-004) 169791933-169807071 protein_coding
ENST00000461708 (SSB-007) 169798880-169806007 retained_intron
ENST00000465871 (SSB-010) 169806836-169808666 retained_intron
ENST00000468600 (SSB-008) 169805744-169806978 retained_intron
ENST00000470621 (SSB-013) 169808477-169810602 retained_intron
ENST00000474273 (SSB-009) 169806581-169810411 retained_intron
ENST00000490914 (SSB-011) 169808477-169811044 retained_intron
ENST00000494051 (SSB-012) 169810063-169810888 retained_intron
ENSG00000144362 (PHOSPHO2)
phosphatase, orphan 2 		ENST00000359744 (PHOSPHO2-001) 169694465-169701708 protein_coding
ENST00000438710 (PHOSPHO2-002) 169694471-169701378 protein_coding
ENST00000438838 (PHOSPHO2-005) 169694471-169701138 protein_coding
ENST00000449906 (PHOSPHO2-003) 169694487-169701118 protein_coding
ENST00000476919 (PHOSPHO2-004) 169695214-169698300 processed_transcript
ENST00000616481 (PHOSPHO2-201) 169694454-169701706 protein_coding
ENST00000616524 (PHOSPHO2-202) 169694454-169701706 protein_coding
ENST00000617738 (PHOSPHO2-203) 169694454-169701706 protein_coding
ENSG00000213160 (KLHL23)
kelch-like family member 23 		ENST00000272797 (KLHL23-006) 169694491-169749804 protein_coding
ENST00000392647 (KLHL23-001) 169733846-169751888 protein_coding
ENST00000437875 (KLHL23-003) 169735552-169773385 protein_coding
ENST00000448589 (KLHL23-004) 169741493-169776989 protein_coding
ENST00000494387 (KLHL23-002) 169740997-169749500 retained_intron
ENST00000498202 (KLHL23-005) 169694488-169749682 protein_coding
ENST00000602521 (KLHL23-007) 169697393-169749759 protein_coding
ENSG00000214369 (AC009967.3)
 ENST00000379462 (AC009967.3-001) 169790093-169790885 processed_pseudogene
ENSG00000231550 (PTCHD3P2)
patched domain containing 3 pseudogene 2 		ENST00000424937 (PTCHD3P2-001) 169767185-169768799 processed_pseudogene
CIL_0004SC_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000042155-ENSMUSG00000068882 CGP 10090 2:69821944-69871846
GeneTranscriptPositionBiotype
ENSMUSG00000042155 (Klhl23)
kelch-like 23 		ENSMUST00000053087 (Klhl23-001) 69822370-69836651 protein_coding
ENSMUST00000135759 (Klhl23-002) 69821944-69824323 processed_transcript
ENSMUST00000152898 (Klhl23-003) 69824354-69826244 processed_transcript
ENSMUSG00000051730 (Mettl5)
methyltransferase like 5 		ENSMUST00000060447 (Mettl5-001) 69871198-69885615 protein_coding
ENSMUST00000135459 (Mettl5-004) 69871218-69874050 retained_intron
ENSMUST00000135487 (Mettl5-003) 69877748-69885604 retained_intron
ENSMUST00000142127 (Mettl5-002) 69871214-69885597 nonsense_mediated_decay
ENSMUSG00000068882 (Ssb)
Sjogren syndrome antigen B 		ENSMUST00000090852 (Ssb-001) 69861562-69871786 protein_coding
ENSMUST00000112260 (Ssb-003) 69861686-69867552 protein_coding
ENSMUST00000132186 (Ssb-002) 69861623-69871510 nonsense_mediated_decay
ENSMUST00000132603 (Ssb-005) 69868779-69871510 protein_coding
ENSMUST00000156057 (Ssb-004) 69863291-69869150 processed_transcript
ENSMUST00000166411 (Ssb-201) 69861562-69871846 protein_coding

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0004SC_0001ENSG00000138385ENST00000260956ENST00000409333ENST00000413002ENST00000417292ENST00000422006ENST00000461708ENST00000465871ENST00000468600ENST00000470621ENST00000474273ENST00000490914ENST00000494051ENSG00000144362ENST00000359744ENST00000438710ENST00000438838ENST00000449906ENST00000476919ENST00000616481ENST00000616524ENST00000617738ENSG00000213160ENST00000272797ENST00000392647ENST00000437875ENST00000448589ENST00000494387ENST00000498202ENST00000602521ENSG00000214369ENST00000379462ENSG00000231550ENST00000424937CIL_0004SC_0002ENSMUSG00000042155ENSMUST00000053087ENSMUST00000135759ENSMUST00000152898ENSMUSG00000051730ENSMUST00000060447ENSMUST00000135459ENSMUST00000135487ENSMUST00000142127ENSMUSG00000068882ENSMUST00000090852ENSMUST00000112260ENSMUST00000132186ENSMUST00000132603ENSMUST00000156057ENSMUST00000166411
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0004SC_0001ENSG00000138385ENST00000260956ENST00000461708ENSG00000144362ENST00000359744ENST00000438710ENSG00000213160ENST00000272797ENST00000392647ENST00000437875ENST00000602521ENSG00000214369ENST00000379462ENSG00000231550ENST00000424937CIL_0004SC_0002ENSMUSG00000042155ENSMUST00000053087ENSMUST00000152898ENSMUSG00000051730ENSMUST00000060447ENSMUST00000135487ENSMUST00000142127ENSMUSG00000068882ENSMUST00000090852ENSMUST00000112260ENSMUST00000132186ENSMUST00000132603ENSMUST00000156057ENSMUST00000166411
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000138385 ENST00000260956 17.672±0.00 37.731±0.00 3.795±0.00 13.594±2.63 14.031±4.19 14.745±7.58 0.900±0.00 11.164±5.54 5.006±0.50 6.340±1.94 N/A 70.160±67.73 28.182±23.47 35.002±6.67
ENST00000409333 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000413002 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000417292 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000422006 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000461708 N/A N/A N/A N/A N/A N/A 4.078±0.00 N/A 13.684±0.00 9.501±0.00 N/A N/A N/A N/A
ENST00000465871 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000468600 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000470621 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000474273 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000490914 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000494051 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000144362 ENST00000359744 2.460±0.00 N/A N/A N/A N/A N/A N/A N/A 0.846±0.00 N/A N/A N/A N/A N/A
ENST00000438710 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.308±0.00 N/A N/A N/A
ENST00000438838 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000449906 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000476919 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000616481 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000616524 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000617738 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000213160 ENST00000272797 N/A N/A 0.868±0.00 N/A 1.427±0.00 1.149±0.00 N/A N/A N/A 1.236±0.00 N/A N/A N/A N/A
ENST00000392647 0.727±0.00 1.190±0.00 N/A 3.858±0.50 2.102±0.33 4.054±2.75 2.596±0.82 1.287±0.21 1.912±1.10 1.590±1.17 1.563±0.00 7.126±3.30 3.002±1.10 4.726±0.00
ENST00000437875 N/A N/A 2.347±0.00 N/A N/A N/A N/A N/A N/A 1.024±0.00 2.461±0.00 N/A N/A N/A
ENST00000448589 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000494387 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000498202 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000602521 N/A N/A N/A N/A N/A N/A N/A 2.323±0.00 N/A N/A N/A 16.396±0.00 N/A N/A
ENSG00000214369 ENST00000379462 0.157±0.00 0.514±0.00 N/A 0.592±0.00 0.179±0.00 0.162±0.00 0.150±0.00 0.398±0.00 0.052±0.00 0.158±0.00 0.017±0.00 0.056±0.00 N/A 0.206±0.09
ENSG00000231550 ENST00000424937 0.086±0.00 0.115±0.00 N/A 0.028±0.00 0.148±0.07 0.109±0.00 0.065±0.00 N/A 0.121±0.05 0.156±0.00 N/A 0.090±0.03 0.145±0.00 0.579±0.01
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000042155 ENSMUST00000053087 1.853±0.84 1.866±0.98 3.788±0.00 9.866±5.05 1.038±0.73 2.860±2.48 2.904±1.61 0.533±0.00 2.738±2.27 1.486±0.54 2.372±1.75 3.913±2.34 0.481±0.15 3.863±1.00
ENSMUST00000135759 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000152898 N/A N/A N/A N/A N/A N/A N/A N/A 0.160±0.03 N/A N/A 9.581±0.00 1.842±0.00 N/A
ENSMUSG00000051730 ENSMUST00000060447 2.363±0.00 3.190±0.67 N/A N/A 4.596±0.00 3.992±1.13 2.210±0.31 2.053±0.35 2.230±0.66 2.079±0.00 8.030±0.65 1.344±0.00 N/A N/A
ENSMUST00000135459 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000135487 1.266±0.14 1.337±0.00 N/A N/A 1.164±0.31 N/A 0.911±0.53 0.616±0.15 0.735±0.07 1.025±0.35 N/A 0.867±0.43 N/A 0.908±0.19
ENSMUST00000142127 N/A 23.057±2.87 N/A N/A 5.465±1.93 7.836±3.45 2.924±0.19 4.266±1.13 5.678±2.03 3.420±1.50 N/A 8.264±1.88 N/A N/A
ENSMUSG00000068882 ENSMUST00000090852 2.791±0.35 N/A 28.736±1.91 26.224±2.94 N/A 2.311±0.40 2.370±0.58 3.266±1.15 18.102±21.60 3.429±1.60 10.642±2.44 15.007±10.15 18.120±5.47 3.179±0.79
ENSMUST00000112260 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 57.960±6.01 47.114±2.30 N/A
ENSMUST00000132186 N/A N/A 18.156±2.20 21.255±8.52 N/A N/A 1.610±0.00 1.956±0.82 21.288±13.74 N/A 4.376±0.80 N/A 23.450±10.58 19.284±0.00
ENSMUST00000132603 N/A N/A N/A 56.302±0.00 N/A N/A N/A N/A 32.004±14.97 N/A 5.825±0.00 78.442±32.80 67.330±59.09 39.884±0.00
ENSMUST00000156057 N/A N/A N/A N/A 4.333±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000166411 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.560±0.00 N/A N/A

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