C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: Sjogren syndrome antigen B (autoantigen La)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000260956 SSB-001 ENSG00000138385 9606 + 2:169798812-169812064 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungOvaryPlacentaTestisENST00000260956
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Ovary Placenta Testis
ENST00000260956 17.672±0.00 37.731±0.00 3.795±0.00 13.594±2.63 14.031±4.19 14.745±7.58 0.900±0.00 11.164±5.54 5.006±0.50 6.340±1.94 70.160±67.73 28.182±23.47 35.002±6.67

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004SC CIL_0004SC_0001 CGP 2:169694488-169812064
CIL_0007VY CIL_0007VY_0001 VISTA 2:169713097-170314655
CIL_0004SJ CIL_0004SJ_0001 CGP 2:169791933-169824931

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000049 TAS tRNA binding
GO:0000166 IEA nucleotide binding
GO:0003676 IEA nucleic acid binding
GO:0003729 TAS mRNA binding
GO:0005515 IPI protein binding
GO:0006396 IEA RNA processing
GO:0006400 TAS tRNA modification
GO:0008334 TAS histone mRNA metabolic process
GO:0030529 IEA ribonucleoprotein complex
GO:0044822 IDA poly(A) RNA binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000090852 Ssb-001 protein_coding Mus_musculus 0 1184
ENSMUST00000166411 Ssb-201 protein_coding Mus_musculus 0 1182
ENSMUST00000112260 Ssb-003 protein_coding Mus_musculus 0 704
ENSMUST00000132186 Ssb-002 nonsense_mediated_decay Mus_musculus 0 606
ENSMUST00000156057 Ssb-004 processed_transcript Mus_musculus 0 536
ENSMUST00000132603 Ssb-005 protein_coding Mus_musculus 0 479

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