C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: COP9 signalosome subunit 4
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000511653 COPS4-004 ENSG00000138663 9606 + 4:83035225-83075756 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainColonHeartLungOvaryTestisENST00000511653
Transcript ID Brain Colon Heart Lung Ovary Testis
ENST00000511653 4.538±0.00 2.053±0.00 2.300±0.71 1.569±0.12 2.403±0.00 6.134±1.45

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00052W CIL_00052W_0002 CGP 4:82909973-83075818
CIL_00052V CIL_00052V_0002 CGP 4:83034447-83137075

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IEA protein binding
GO:0005634 IDA nucleus

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000045993 Cops4-001 protein_coding Mus_musculus 0 1456
ENSMUST00000123492 Cops4-007 nonsense_mediated_decay Mus_musculus 0 1005
ENSMUST00000151414 Cops4-006 protein_coding Mus_musculus 0 922
ENSMUST00000123559 Cops4-003 retained_intron Mus_musculus 0 915
ENSMUST00000146476 Cops4-005 protein_coding Mus_musculus 0 889
ENSMUST00000123069 Cops4-004 nonsense_mediated_decay Mus_musculus 0 608
ENSMUST00000147729 Cops4-002 retained_intron Mus_musculus 0 542

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