C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: COP9 signalosome subunit 4
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000503682 COPS4-003 ENSG00000138663 9606 + 4:83035207-83075797 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBrainBreastColonLiverPlacentaENST00000503682
Transcript ID Adipose Brain Breast Colon Liver Placenta
ENST00000503682 2.321±0.00 5.225±0.00 1.130±0.00 2.190±0.00 3.091±0.00 1.798±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00052W CIL_00052W_0002 CGP 4:82909973-83075818
CIL_00052V CIL_00052V_0002 CGP 4:83034447-83137075

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IEA protein binding
GO:0005634 IDA nucleus
GO:0030054 IDA cell junction

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000045993 Cops4-001 protein_coding Mus_musculus 0 1170
ENSMUST00000151414 Cops4-006 protein_coding Mus_musculus 0 922
ENSMUST00000146476 Cops4-005 protein_coding Mus_musculus 0 889
ENSMUST00000123492 Cops4-007 nonsense_mediated_decay Mus_musculus 0 822
ENSMUST00000123559 Cops4-003 retained_intron Mus_musculus 0 649
ENSMUST00000123069 Cops4-004 nonsense_mediated_decay Mus_musculus 0 608
ENSMUST00000147729 Cops4-002 retained_intron Mus_musculus 0 562

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