C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: COP9 signalosome subunit 4
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000264389 COPS4-001 ENSG00000138663 9606 + 4:83035090-83075818 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000264389
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000264389 10.278±0.00 12.470±0.00 3.218±0.00 17.240±1.08 8.751±2.55 7.273±2.32 11.272±4.59 10.189±3.91 4.245±1.26 5.803±1.30 19.789±5.34 13.420±6.03 12.553±1.92 25.230±3.30

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00052W CIL_00052W_0002 CGP 4:82909973-83075818
CIL_00052V CIL_00052V_0002 CGP 4:83034447-83137075

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000338 IMP protein deneddylation
GO:0005515 IPI:IEA protein binding
GO:0005634 IDA nucleus
GO:0008021 IDA synaptic vesicle
GO:0008180 IDA COP9 signalosome
GO:0010388 IDA cullin deneddylation
GO:0030054 IDA cell junction
GO:0070062 IDA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000045993 Cops4-001 protein_coding Mus_musculus 0 1917
ENSMUST00000123559 Cops4-003 retained_intron Mus_musculus 0 1254
ENSMUST00000123492 Cops4-007 nonsense_mediated_decay Mus_musculus 0 1005
ENSMUST00000151414 Cops4-006 protein_coding Mus_musculus 0 922
ENSMUST00000146476 Cops4-005 protein_coding Mus_musculus 0 889
ENSMUST00000123069 Cops4-004 nonsense_mediated_decay Mus_musculus 0 608
ENSMUST00000147729 Cops4-002 retained_intron Mus_musculus 0 562

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