C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: family with sequence similarity 188, member A
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000477891 FAM188A-002 ENSG00000148481 9606 - 10:15778170-15860498 processed_transcript

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBrainBreastColonHeartLiverLungMuscleOvaryPlacentaTestisENST00000477891
Transcript ID Adrenal Brain Breast Colon Heart Liver Lung Muscle Ovary Placenta Testis
ENST00000477891 1.301±0.00 1.356±0.00 1.032±0.00 2.151±0.30 1.088±0.07 1.298±0.63 2.801±0.00 0.645±0.28 1.042±0.15 1.090±0.00 1.715±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00088I CIL_00088I_0001 VISTA 10:15191068-15798325
CIL_0002HM CIL_0002HM_0001 CGP 10:15513949-15860520
CIL_0002HH CIL_0002HH_0001 CGP 10:15778170-16513745

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000155530 Fam188a-005 nonsense_mediated_decay Mus_musculus 0 2106
ENSMUST00000028105 Fam188a-001 protein_coding Mus_musculus 0 1509
ENSMUST00000129489 Fam188a-002 nonsense_mediated_decay Mus_musculus 0 1509
ENSMUST00000154899 Fam188a-006 protein_coding Mus_musculus 0 1339
ENSMUST00000137082 Fam188a-014 retained_intron Mus_musculus 0 1171
ENSMUST00000144645 Fam188a-004 nonsense_mediated_decay Mus_musculus 0 929
ENSMUST00000130225 Fam188a-015 retained_intron Mus_musculus 0 782
ENSMUST00000124603 Fam188a-008 nonsense_mediated_decay Mus_musculus 0 701
ENSMUST00000130097 Fam188a-003 retained_intron Mus_musculus 0 597
ENSMUST00000135397 Fam188a-016 nonsense_mediated_decay Mus_musculus 0 449
ENSMUST00000153690 Fam188a-011 processed_transcript Mus_musculus 0 422
ENSMUST00000151529 Fam188a-010 nonsense_mediated_decay Mus_musculus 0 418
ENSMUST00000129348 Fam188a-012 protein_coding Mus_musculus 0 403
ENSMUST00000129993 Fam188a-007 processed_transcript Mus_musculus 0 263
ENSMUST00000154952 Fam188a-013 processed_transcript Mus_musculus 0 217
ENSMUST00000124515 Fam188a-009 protein_coding Mus_musculus 0 217

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