C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: family with sequence similarity 188, member A
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000277632 FAM188A-001 ENSG00000148481 9606 - 10:15778170-15860520 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungOvaryPlacentaTestisENST00000277632
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Ovary Placenta Testis
ENST00000277632 4.306±0.00 3.785±0.00 9.048±3.87 4.614±0.00 1.829±0.00 1.906±0.00 5.224±3.07 2.029±0.00 0.536±0.00 4.991±0.46 5.650±1.03 7.625±0.71

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00088I CIL_00088I_0001 VISTA 10:15191068-15798325
CIL_0002HM CIL_0002HM_0001 CGP 10:15513949-15860520
CIL_0002HH CIL_0002HH_0001 CGP 10:15778170-16513745

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005509 IEA calcium ion binding
GO:0005515 IPI protein binding
GO:0005634 IEA nucleus
GO:0006915 IEA apoptotic process

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000028105 Fam188a-001 protein_coding Mus_musculus 0 2202
ENSMUST00000129489 Fam188a-002 nonsense_mediated_decay Mus_musculus 0 2189
ENSMUST00000155530 Fam188a-005 nonsense_mediated_decay Mus_musculus 0 1509
ENSMUST00000130225 Fam188a-015 retained_intron Mus_musculus 0 1474
ENSMUST00000154899 Fam188a-006 protein_coding Mus_musculus 0 1339
ENSMUST00000137082 Fam188a-014 retained_intron Mus_musculus 0 1171
ENSMUST00000144645 Fam188a-004 nonsense_mediated_decay Mus_musculus 0 929
ENSMUST00000130097 Fam188a-003 retained_intron Mus_musculus 0 869
ENSMUST00000124603 Fam188a-008 nonsense_mediated_decay Mus_musculus 0 701
ENSMUST00000153690 Fam188a-011 processed_transcript Mus_musculus 0 656
ENSMUST00000129348 Fam188a-012 protein_coding Mus_musculus 0 499
ENSMUST00000135397 Fam188a-016 nonsense_mediated_decay Mus_musculus 0 449
ENSMUST00000151529 Fam188a-010 nonsense_mediated_decay Mus_musculus 0 431
ENSMUST00000129993 Fam188a-007 processed_transcript Mus_musculus 0 263
ENSMUST00000124515 Fam188a-009 protein_coding Mus_musculus 0 250
ENSMUST00000154952 Fam188a-013 processed_transcript Mus_musculus 0 217

Loading