C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: family with sequence similarity 188, member A
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000026767 Fam188a 10090 - 2:12347263-12419469 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000028105 Fam188a-001 12347265-12419469 protein_coding
  ENSMUST00000124515 Fam188a-009 12401059-12419391 protein_coding
  ENSMUST00000124603 Fam188a-008 12355307-12419443 nonsense_mediated_decay
  ENSMUST00000129348 Fam188a-012 12386647-12410065 protein_coding
  ENSMUST00000129489 Fam188a-002 12347263-12419444 nonsense_mediated_decay
  ENSMUST00000129993 Fam188a-007 12386607-12419448 processed_transcript
  ENSMUST00000130097 Fam188a-003 12399659-12419441 retained_intron
  ENSMUST00000130225 Fam188a-015 12356785-12396248 retained_intron
  ENSMUST00000135397 Fam188a-016 12347632-12356911 nonsense_mediated_decay
  ENSMUST00000137082 Fam188a-014 12355332-12397885 retained_intron
  ENSMUST00000144645 Fam188a-004 12347920-12419452 nonsense_mediated_decay
  ENSMUST00000151529 Fam188a-010 12401070-12419249 nonsense_mediated_decay
  ENSMUST00000153690 Fam188a-011 12400044-12410204 processed_transcript
  ENSMUST00000154899 Fam188a-006 12348062-12419462 protein_coding
  ENSMUST00000154952 Fam188a-013 12403998-12404729 processed_transcript
  ENSMUST00000155530 Fam188a-005 12347266-12419435 nonsense_mediated_decay

Mus musculus EnsemblGRCm38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000028105ENSMUST00000124515ENSMUST00000124603ENSMUST00000129348ENSMUST00000129489ENSMUST00000129993ENSMUST00000130097ENSMUST00000130225ENSMUST00000135397ENSMUST00000144645ENSMUST00000153690ENSMUST00000155530
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000028105 4.079±0.37 8.769±1.08 6.841±1.22 6.970±4.15 3.143±0.73 4.129±0.83 1.667±0.05 5.829±1.03 5.965±2.15 5.838±1.27 1.185±0.29 2.992±0.41 4.976±3.28 3.830±1.73
ENSMUST00000124515 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 24.866±0.00 N/A
ENSMUST00000124603 N/A N/A N/A N/A N/A 3.262±0.00 N/A N/A N/A N/A N/A 4.803±0.00 N/A N/A
ENSMUST00000129348 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 18.748±0.00 17.312±1.27 6.094±0.00
ENSMUST00000129489 N/A N/A N/A 1.035±0.00 N/A N/A N/A N/A N/A N/A 1.003±0.00 2.087±0.68 N/A N/A
ENSMUST00000129993 29.284±2.69 65.281±23.99 N/A 39.873±0.00 33.552±4.67 40.410±11.90 8.072±1.86 35.152±11.60 22.039±3.19 42.524±3.86 N/A 15.902±7.97 N/A 22.163±1.28
ENSMUST00000130097 N/A N/A N/A N/A N/A 4.324±0.00 0.879±0.00 N/A N/A 3.576±0.00 N/A 6.736±2.65 N/A N/A
ENSMUST00000130225 N/A N/A N/A 14.987±0.00 N/A N/A N/A N/A N/A N/A N/A 24.236±0.00 19.196±2.04 7.409±0.00
ENSMUST00000135397 N/A N/A N/A N/A 2.263±0.00 N/A N/A N/A N/A N/A 1.402±0.00 N/A N/A N/A
ENSMUST00000144645 2.490±0.33 N/A N/A N/A 4.975±0.00 5.322±0.64 1.021±0.24 4.349±0.90 3.604±0.42 4.650±0.64 N/A 4.167±0.85 N/A 2.422±0.00
ENSMUST00000153690 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 8.514±0.00 2.885±0.00
ENSMUST00000155530 N/A N/A N/A 1.025±0.00 3.259±2.11 4.833±0.00 0.917±0.21 N/A N/A N/A 0.910±0.29 2.679±0.00 N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00088I CIL_00088I_0002 VISTA 2:11765185-12368019
CIL_0002HM CIL_0002HM_0002 CGP 2:12106632-12419469
CIL_0002HH CIL_0002HH_0002 CGP 2:12347263-13003453

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005509 IEA calcium ion binding
GO:0005515 IEA protein binding
GO:0005634 IEA nucleus
GO:0006915 IEA apoptotic process
GO:0008150 ND biological_process

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000028715 fam188a family with sequence similarity 188, member A protein_coding Danio_rerio
ENSG00000148481 FAM188A family with sequence similarity 188, member A protein_coding Homo_sapiens

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