C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: cancer susceptibility candidate 4
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000166734 CASC4 9606 + 15:44288729-44415758 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000299957 CASC4-001 44288731-44415758 protein_coding
  ENST00000345795 CASC4-002 44288760-44415757 protein_coding
  ENST00000429162 CASC4-004 44288738-44308536 processed_transcript
  ENST00000557945 CASC4-005 44288731-44348918 nonsense_mediated_decay
  ENST00000558735 CASC4-007 44289105-44332059 nonsense_mediated_decay
  ENST00000558847 CASC4-009 44337764-44413543 protein_coding
  ENST00000559037 CASC4-008 44328700-44346149 processed_transcript
  ENST00000559151 CASC4-010 44406330-44409847 processed_transcript
  ENST00000559222 CASC4-006 44288729-44337881 protein_coding
  ENST00000559550 CASC4-012 44380864-44382229 processed_transcript
  ENST00000561305 CASC4-011 44403051-44414761 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000299957ENST00000345795ENST00000558847ENST00000559151ENST00000559222
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000299957 13.269±0.00 N/A 7.042±0.00 16.013±2.25 6.200±0.96 10.476±3.22 4.643±0.28 11.064±1.22 8.764±0.97 13.737±1.48 5.290±2.80 11.408±1.76 3.681±1.29 9.817±4.74
ENST00000345795 5.695±0.00 6.413±0.00 N/A N/A 7.236±2.45 7.029±0.00 2.341±0.00 N/A 2.582±0.00 6.959±0.00 N/A 6.368±2.42 4.101±0.96 8.763±0.00
ENST00000558847 N/A N/A 14.599±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000559151 0.195±0.00 1.008±0.00 0.054±0.00 0.411±0.26 0.432±0.22 0.525±0.16 0.413±0.33 0.623±0.00 0.400±0.16 0.304±0.24 0.261±0.15 0.215±0.10 N/A 0.290±0.24
ENST00000559222 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 29.493±0.00 29.897±0.00 43.456±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000687 CIL_000687_0001 CGP 15:43870761-44415758
CIL_0004QJ CIL_0004QJ_0002 CGP 15:44288729-44529038

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005794 IDA Golgi apparatus
GO:0016021 IEA integral component of membrane

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000074490 casc4 cancer susceptibility candidate 4 protein_coding Danio_rerio
ENSMUSG00000060227 Casc4 cancer susceptibility candidate 4 protein_coding Mus_musculus

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