C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0004QJ_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSDARG00000074490-ENSDARG00000060586 CGP 7955 7:32673668-32727762
GeneTranscriptPositionBiotype
ENSDARG00000060586 (ctdspl2b)
CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase like 2b 		ENSDART00000085505 (ctdspl2b-001) 32708893-32725639 protein_coding
ENSDART00000130822 (ctdspl2b-201) 32714061-32727762 protein_coding
ENSDARG00000074490 (casc4)
cancer susceptibility candidate 4 		ENSDART00000114148 (casc4-201) 32673668-32702426 protein_coding

Danio rerio Ensembl (Zv9)

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CIL_0004QJ_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000166734-ENSG00000137770 CGP 9606 15:44288729-44529038
GeneTranscriptPositionBiotype
ENSG00000137770 (CTDSPL2)
CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase like 2 		ENST00000260327 (CTDSPL2-001) 44427234-44529038 protein_coding
ENST00000558373 (CTDSPL2-003) 44459003-44527232 protein_coding
ENST00000558791 (CTDSPL2-010) 44427622-44490804 protein_coding
ENST00000558966 (CTDSPL2-002) 44427793-44524543 protein_coding
ENST00000558968 (CTDSPL2-006) 44427814-44484314 protein_coding
ENST00000559175 (CTDSPL2-004) 44519637-44525947 retained_intron
ENST00000559738 (CTDSPL2-009) 44519224-44524436 processed_transcript
ENST00000559793 (CTDSPL2-005) 44427808-44486578 protein_coding
ENST00000560620 (CTDSPL2-008) 44497027-44521406 nonsense_mediated_decay
ENST00000560834 (CTDSPL2-011) 44427642-44484347 processed_transcript
ENST00000561189 (CTDSPL2-007) 44490992-44503879 processed_transcript
ENSG00000166734 (CASC4)
cancer susceptibility candidate 4 		ENST00000299957 (CASC4-001) 44288731-44415758 protein_coding
ENST00000345795 (CASC4-002) 44288760-44415757 protein_coding
ENST00000429162 (CASC4-004) 44288738-44308536 processed_transcript
ENST00000557945 (CASC4-005) 44288731-44348918 nonsense_mediated_decay
ENST00000558735 (CASC4-007) 44289105-44332059 nonsense_mediated_decay
ENST00000558847 (CASC4-009) 44337764-44413543 protein_coding
ENST00000559037 (CASC4-008) 44328700-44346149 processed_transcript
ENST00000559151 (CASC4-010) 44406330-44409847 processed_transcript
ENST00000559222 (CASC4-006) 44288729-44337881 protein_coding
ENST00000559550 (CASC4-012) 44380864-44382229 processed_transcript
ENST00000561305 (CASC4-011) 44403051-44414761 protein_coding
ENSG00000179523 (EIF3J-AS1)
EIF3J antisense RNA 1 (head to head) 		ENST00000313807 (EIF3J-AS1-001) 44533493-44536923 lincRNA
ENST00000558323 (EIF3J-AS1-005) 44535089-44535943 lincRNA
ENST00000559356 (EIF3J-AS1-003) 44535069-44536894 lincRNA
ENST00000560049 (EIF3J-AS1-002) 44535252-44536900 lincRNA
ENST00000560750 (EIF3J-AS1-004) 44527257-44536640 lincRNA
ENSG00000250130 (RP11-616K22.1)
 ENST00000508195 (RP11-616K22.1-001) 44354691-44355692 processed_pseudogene
ENSG00000259335 (HNRNPMP1)
heterogeneous nuclear ribonucleoprotein M pseudogene 1 		ENST00000560685 (HNRNPMP1-001) 44447577-44449344 processed_pseudogene
ENSG00000259499 (RP11-616K22.2)
 ENST00000559034 (RP11-616K22.2-001) 44387320-44390451 lincRNA
ENSG00000259563 (CTD-2329K10.1)
 ENST00000561324 (CTD-2329K10.1-001) 44516650-44517483 antisense

Homo sapiens Ensembl (GRCh38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0004QJ_0001ENSDARG00000060586ENSDART00000085505ENSDART00000130822ENSDARG00000074490ENSDART00000114148CIL_0004QJ_0002ENSG00000137770ENST00000260327ENST00000558373ENST00000558791ENST00000558966ENST00000558968ENST00000559175ENST00000559738ENST00000559793ENST00000560620ENST00000560834ENST00000561189ENSG00000166734ENST00000299957ENST00000345795ENST00000429162ENST00000557945ENST00000558735ENST00000558847ENST00000559037ENST00000559151ENST00000559222ENST00000559550ENST00000561305ENSG00000179523ENST00000313807ENST00000558323ENST00000559356ENST00000560049ENST00000560750ENSG00000250130ENST00000508195ENSG00000259335ENST00000560685ENSG00000259499ENST00000559034ENSG00000259563ENST00000561324
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0004QJ_0001ENSDARG00000060586ENSDART00000085505ENSDART00000130822ENSDARG00000074490ENSDART00000114148CIL_0004QJ_0002ENSG00000137770ENST00000260327ENST00000558373ENST00000558966ENST00000559175ENST00000560834ENSG00000166734ENST00000299957ENST00000345795ENST00000558847ENST00000559151ENST00000559222ENSG00000179523ENST00000313807ENST00000560750ENSG00000250130ENST00000508195ENSG00000259335ENST00000560685ENSG00000259499ENST00000559034ENSG00000259563ENST00000561324
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSDARG00000060586 ENSDART00000085505 N/A N/A N/A N/A N/A N/A N/A N/A 0.232±0.00 N/A N/A N/A N/A N/A
ENSDART00000130822 N/A N/A N/A 6.406±2.46 N/A N/A 1.154±0.24 0.863±0.00 0.154±0.00 N/A 0.798±0.00 N/A N/A N/A
ENSDARG00000074490 ENSDART00000114148 N/A N/A N/A 12.514±5.92 N/A N/A 2.908±2.36 3.891±2.33 0.682±0.00 N/A 3.407±0.00 N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000137770 ENST00000260327 4.848±0.00 2.696±0.00 2.345±0.00 0.879±0.00 3.135±0.25 2.032±0.46 0.848±0.06 1.362±0.00 1.308±0.79 4.795±0.00 1.157±0.00 2.307±0.86 1.275±0.84 1.799±0.73
ENST00000558373 N/A N/A N/A N/A 1.602±0.00 1.110±0.00 1.116±0.00 1.143±0.39 0.285±0.00 N/A 0.721±0.00 1.828±0.33 1.388±0.77 3.225±1.35
ENST00000558791 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000558966 N/A N/A N/A 2.007±0.00 N/A N/A N/A N/A N/A 5.912±0.00 N/A 4.381±0.00 N/A 3.967±0.30
ENST00000558968 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000559175 N/A N/A N/A N/A N/A N/A 0.769±0.00 N/A N/A N/A N/A N/A N/A N/A
ENST00000559738 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000559793 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000560620 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000560834 N/A N/A N/A N/A N/A N/A N/A 4.677±0.00 N/A N/A N/A N/A N/A N/A
ENST00000561189 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000166734 ENST00000299957 13.269±0.00 N/A 7.042±0.00 16.013±2.25 6.200±0.96 10.476±3.22 4.643±0.28 11.064±1.22 8.764±0.97 13.737±1.48 5.290±2.80 11.408±1.76 3.681±1.29 9.817±4.74
ENST00000345795 5.695±0.00 6.413±0.00 N/A N/A 7.236±2.45 7.029±0.00 2.341±0.00 N/A 2.582±0.00 6.959±0.00 N/A 6.368±2.42 4.101±0.96 8.763±0.00
ENST00000429162 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000557945 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000558735 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000558847 N/A N/A 14.599±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000559037 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000559151 0.195±0.00 1.008±0.00 0.054±0.00 0.411±0.26 0.432±0.22 0.525±0.16 0.413±0.33 0.623±0.00 0.400±0.16 0.304±0.24 0.261±0.15 0.215±0.10 N/A 0.290±0.24
ENST00000559222 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 29.493±0.00 29.897±0.00 43.456±0.00
ENST00000559550 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000561305 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000179523 ENST00000313807 N/A N/A N/A 1.199±0.00 N/A 2.311±0.00 N/A 1.989±1.10 N/A N/A N/A 3.076±0.00 1.391±0.00 N/A
ENST00000558323 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000559356 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000560049 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000560750 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.936±0.00 N/A N/A N/A
ENSG00000250130 ENST00000508195 N/A 0.259±0.00 0.210±0.00 0.205±0.15 0.453±0.44 0.566±0.55 0.093±0.03 0.131±0.06 0.215±0.19 0.303±0.00 0.176±0.00 0.303±0.23 0.183±0.09 0.938±0.76
ENSG00000259335 ENST00000560685 0.016±0.00 0.050±0.00 0.154±0.00 0.030±0.02 0.058±0.02 0.335±0.31 0.070±0.02 N/A 0.098±0.00 0.134±0.00 N/A 0.097±0.09 N/A 0.022±0.01
ENSG00000259499 ENST00000559034 0.068±0.00 0.063±0.00 N/A 0.172±0.06 N/A 0.079±0.00 0.147±0.13 0.073±0.00 N/A N/A N/A 0.062±0.03 0.090±0.04 0.091±0.00
ENSG00000259563 ENST00000561324 0.521±0.00 0.942±0.00 N/A 0.522±0.00 0.113±0.03 0.115±0.00 0.215±0.00 0.634±0.09 0.059±0.04 0.130±0.02 0.023±0.00 0.129±0.04 0.191±0.00 0.394±0.00

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