C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: ribosomal protein L13
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000167526 RPL13 9606 + 16:89560657-89566828 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000311528 RPL13-001 89560657-89566828 protein_coding
  ENST00000393099 RPL13-002 89560711-89564542 protein_coding
  ENST00000399461 RPL13-003 89560904-89563066 retained_intron
  ENST00000452368 RPL13-015 89560683-89563952 protein_coding
  ENST00000467736 RPL13-006 89560711-89561710 protein_coding
  ENST00000472354 RPL13-008 89562370-89563438 protein_coding
  ENST00000484610 RPL13-004 89560679-89563067 retained_intron
  ENST00000487034 RPL13-007 89560682-89561523 retained_intron
  ENST00000491523 RPL13-005 89560677-89562393 retained_intron
  ENST00000562879 RPL13-011 89560682-89563473 nonsense_mediated_decay
  ENST00000563270 RPL13-016 89560681-89563032 protein_coding
  ENST00000563749 RPL13-010 89560677-89563043 retained_intron
  ENST00000565571 RPL13-018 89560683-89561849 retained_intron
  ENST00000567815 RPL13-009 89560681-89563080 protein_coding
  ENST00000570149 RPL13-017 89562140-89563066 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000452368ENST00000467736ENST00000472354ENST00000562879ENST00000563270ENST00000565571ENST00000567815
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000452368 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 124.095±44.16 74.311±0.00 N/A
ENST00000467736 271.348±0.00 N/A N/A N/A 291.427±0.00 N/A N/A N/A N/A N/A N/A 385.416±0.00 237.155±0.00 252.986±0.00
ENST00000472354 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 220.972±0.00 N/A N/A
ENST00000562879 172.470±0.00 189.261±0.00 13.128±0.00 67.569±32.82 63.224±31.54 117.281±82.96 42.340±30.49 45.208±28.95 42.376±3.03 115.881±82.30 148.281±112.63 95.784±69.87 149.801±61.59 90.795±42.03
ENST00000563270 301.471±0.00 433.965±0.00 N/A N/A 194.350±0.00 525.479±0.00 N/A 90.736±63.73 131.191±0.00 591.087±0.00 315.800±0.00 610.984±0.00 327.892±0.00 367.159±0.00
ENST00000565571 N/A N/A N/A N/A N/A N/A N/A 36.057±0.00 N/A N/A N/A N/A N/A N/A
ENST00000567815 286.981±0.00 760.590±0.00 32.249±0.00 86.328±35.95 216.075±124.08 413.846±320.46 99.308±69.05 208.466±115.91 209.890±100.66 494.345±418.77 330.179±189.36 911.804±1052.46 1156.944±747.47 255.970±82.50

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008HA CIL_0008HA_0001 VISTA 16:89018329-89621235
CIL_000331 CIL_000331_0001 CGP 16:89490917-89566828
CIL_0006AP CIL_0006AP_0002 CGP 16:89560657-89597246

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000184 TAS nuclear-transcribed mRNA catabolic process, nonsense-mediated decay
GO:0003723 TAS RNA binding
GO:0003735 IEA:NAS structural constituent of ribosome
GO:0005515 IPI protein binding
GO:0005622 IEA intracellular
GO:0005634 IDA nucleus
GO:0005730 IDA nucleolus
GO:0005737 IDA cytoplasm
GO:0005829 TAS cytosol
GO:0005840 IEA ribosome
GO:0006412 IEA:NAS translation
GO:0006413 TAS translational initiation
GO:0006414 TAS translational elongation
GO:0006415 TAS translational termination
GO:0006614 TAS SRP-dependent cotranslational protein targeting to membrane
GO:0010467 TAS gene expression
GO:0016020 IDA membrane
GO:0016032 TAS viral process
GO:0016070 TAS RNA metabolic process
GO:0016071 TAS mRNA metabolic process
GO:0019058 TAS viral life cycle
GO:0019083 TAS viral transcription
GO:0022625 IDA cytosolic large ribosomal subunit
GO:0022626 TAS cytosolic ribosome
GO:0044267 TAS cellular protein metabolic process
GO:0044822 IDA poly(A) RNA binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000030585 rpl13 ribosomal protein L13 protein_coding Danio_rerio
ENSMUSG00000000740 Rpl13 ribosomal protein L13 protein_coding Mus_musculus
ENSMUSG00000059835 Rpl13-ps3 ribosomal protein L13, pseudogene 3 protein_coding Mus_musculus

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