C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info

Description: ribosomal protein L13
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000467736 RPL13-006 ENSG00000167526 9606 + 16:89560711-89561710 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBreastOvaryPlacentaTestisENST00000467736
Transcript ID Adipose Breast Ovary Placenta Testis
ENST00000467736 271.348±0.00 291.427±0.00 385.416±0.00 237.155±0.00 252.986±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008HA CIL_0008HA_0001 VISTA 16:89018329-89621235
CIL_000331 CIL_000331_0001 CGP 16:89490917-89566828
CIL_0006AP CIL_0006AP_0002 CGP 16:89560657-89597246

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003735 IEA structural constituent of ribosome
GO:0005622 IEA intracellular
GO:0005840 IEA ribosome
GO:0006412 IEA translation

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000152444 Rpl13-003 retained_intron Mus_musculus 0 468
ENSMUST00000000756 Rpl13-001 protein_coding Mus_musculus 0 468
ENSMUST00000132275 Rpl13-004 retained_intron Mus_musculus 0 464
ENSMUST00000120234 Gm12918-001 processed_pseudogene Mus_musculus 0 453
ENSMUST00000121821 Gm15710-001 processed_pseudogene Mus_musculus 0 453
ENSMUST00000079761 Gm10071-201 processed_pseudogene Mus_musculus 0 448
ENSMUST00000079960 Rpl13-ps3-201 protein_coding Mus_musculus 0 409
ENSMUST00000104990 Gm7290-001 processed_pseudogene Mus_musculus 0 403
ENSMUST00000120713 Gm14585-001 processed_pseudogene Mus_musculus 0 302
ENSMUST00000129311 Rpl13-002 retained_intron Mus_musculus 0 289
ENSMUST00000121801 Rpl13-ps1-001 processed_pseudogene Mus_musculus 0 287

Loading