C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ribosomal protein L13
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000563270 RPL13-016 ENSG00000167526 9606 + 16:89560681-89563032 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBreastColonKidneyLiverLungMuscleOvaryPlacentaTestisENST00000563270
Transcript ID Adipose Adrenal Breast Colon Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000563270 301.471±0.00 433.965±0.00 194.350±0.00 525.479±0.00 90.736±63.73 131.191±0.00 591.087±0.00 315.800±0.00 610.984±0.00 327.892±0.00 367.159±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008HA CIL_0008HA_0001 VISTA 16:89018329-89621235
CIL_000331 CIL_000331_0001 CGP 16:89490917-89566828
CIL_0006AP CIL_0006AP_0002 CGP 16:89560657-89597246

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003735 IEA structural constituent of ribosome
GO:0005840 IEA ribosome
GO:0006412 IEA translation

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000120234 Gm12918-001 processed_pseudogene Mus_musculus 0 564
ENSMUST00000000756 Rpl13-001 protein_coding Mus_musculus 0 564
ENSMUST00000121821 Gm15710-001 processed_pseudogene Mus_musculus 0 558
ENSMUST00000079761 Gm10071-201 processed_pseudogene Mus_musculus 0 547
ENSMUST00000121801 Rpl13-ps1-001 processed_pseudogene Mus_musculus 0 494
ENSMUST00000104990 Gm7290-001 processed_pseudogene Mus_musculus 0 475
ENSMUST00000079960 Rpl13-ps3-201 protein_coding Mus_musculus 0 459
ENSMUST00000132275 Rpl13-004 retained_intron Mus_musculus 0 442
ENSMUST00000120713 Gm14585-001 processed_pseudogene Mus_musculus 0 387
ENSMUST00000152444 Rpl13-003 retained_intron Mus_musculus 0 374
ENSMUST00000121199 Gm12466-001 processed_pseudogene Mus_musculus 0 346
ENSMUST00000119124 Gm15131-001 processed_pseudogene Mus_musculus 0 342
ENSMUST00000117813 Rpl13-ps5-001 processed_pseudogene Mus_musculus 0 335
ENSMUST00000129311 Rpl13-002 retained_intron Mus_musculus 0 305
ENSMUST00000119734 Gm12011-001 processed_pseudogene Mus_musculus 0 243

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