C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ribosomal protein L13
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000491523 RPL13-005 ENSG00000167526 9606 + 16:89560677-89562393 retained_intron

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

No expression data.

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008HA CIL_0008HA_0001 VISTA 16:89018329-89621235
CIL_000331 CIL_000331_0001 CGP 16:89490917-89566828
CIL_0006AP CIL_0006AP_0002 CGP 16:89560657-89597246

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000120234 Gm12918-001 processed_pseudogene Mus_musculus 0 444
ENSMUST00000121821 Gm15710-001 processed_pseudogene Mus_musculus 0 444
ENSMUST00000132275 Rpl13-004 retained_intron Mus_musculus 0 444
ENSMUST00000000756 Rpl13-001 protein_coding Mus_musculus 0 444
ENSMUST00000079761 Gm10071-201 processed_pseudogene Mus_musculus 0 438
ENSMUST00000104990 Gm7290-001 processed_pseudogene Mus_musculus 0 401
ENSMUST00000121801 Rpl13-ps1-001 processed_pseudogene Mus_musculus 0 388
ENSMUST00000152444 Rpl13-003 retained_intron Mus_musculus 0 375
ENSMUST00000079960 Rpl13-ps3-201 protein_coding Mus_musculus 0 355
ENSMUST00000120713 Gm14585-001 processed_pseudogene Mus_musculus 0 305
ENSMUST00000129311 Rpl13-002 retained_intron Mus_musculus 0 305
ENSMUST00000117813 Rpl13-ps5-001 processed_pseudogene Mus_musculus 0 283
ENSMUST00000121199 Gm12466-001 processed_pseudogene Mus_musculus 0 274
ENSMUST00000119124 Gm15131-001 processed_pseudogene Mus_musculus 0 267
ENSMUST00000119734 Gm12011-001 processed_pseudogene Mus_musculus 7e-33 145

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