C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: sarcoglycan, epsilon
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000004631 Sgce 10090 - 6:4674350-4747204 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000004750 Sgce-201 4674352-4747204 protein_coding
  ENSMUST00000090686 Sgce-007 4674384-4747157 protein_coding
  ENSMUST00000101677 Sgce-202 4674352-4747204 protein_coding
  ENSMUST00000115577 Sgce-203 4674352-4747204 protein_coding
  ENSMUST00000115579 Sgce-001 4674350-4747204 protein_coding
  ENSMUST00000123907 Sgce-005 4674508-4747037 protein_coding
  ENSMUST00000126151 Sgce-003 4674418-4747019 protein_coding
  ENSMUST00000128109 Sgce-006 4688612-4747080 processed_transcript
  ENSMUST00000130428 Sgce-009 4677931-4689699 processed_transcript
  ENSMUST00000133306 Sgce-004 4674418-4747019 protein_coding
  ENSMUST00000139029 Sgce-008 4691600-4747063 processed_transcript
  ENSMUST00000153284 Sgce-002 4674360-4730126 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000004750ENSMUST00000090686ENSMUST00000101677ENSMUST00000115577ENSMUST00000115579ENSMUST00000123907ENSMUST00000130428ENSMUST00000133306ENSMUST00000153284
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000004750 N/A N/A N/A 0.722±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000090686 4.353±0.00 2.238±0.68 N/A 6.651±0.27 2.136±0.47 0.916±0.24 1.277±0.00 0.619±0.15 0.298±0.19 N/A 0.441±0.15 3.700±0.71 6.356±2.43 0.657±0.41
ENSMUST00000101677 N/A 2.520±0.61 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.629±0.00
ENSMUST00000115577 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.361±0.05 N/A N/A N/A
ENSMUST00000115579 24.088±7.49 8.541±1.71 32.977±0.52 3.510±0.21 11.874±1.29 4.369±0.91 5.949±0.58 3.620±0.79 5.260±4.53 18.994±2.27 2.020±0.48 17.489±3.28 21.282±16.33 2.259±0.65
ENSMUST00000123907 N/A N/A N/A 1.425±0.00 N/A N/A N/A N/A N/A N/A N/A N/A 4.986±0.70 N/A
ENSMUST00000130428 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 34.413±0.00 N/A N/A
ENSMUST00000133306 N/A 3.494±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A 3.700±0.61 5.529±1.01 0.554±0.00
ENSMUST00000153284 N/A N/A N/A N/A 6.683±0.00 1.396±0.00 N/A 1.956±0.00 1.828±0.00 N/A 0.727±0.27 13.661±0.00 17.451±9.90 N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00082O CIL_00082O_0002 VISTA 6:4156170-4759324
CIL_0007XR CIL_0007XR_0002 VISTA 6:4183463-4785322
CIL_00095G CIL_00095G_0002 VISTA 6:4188993-4790635
CIL_0008ZR CIL_0008ZR_0002 VISTA 6:4253537-4855066
CIL_0004SP CIL_0004SP_0003 CGP 6:4600840-4747204
CIL_0006DZ CIL_0006DZ_0002 CGP 6:4674350-4760517

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005509 IEA calcium ion binding
GO:0005515 IPI protein binding
GO:0005794 IDA Golgi apparatus
GO:0005856 IEA cytoskeleton
GO:0005886 IDA plasma membrane
GO:0005887 TAS integral component of plasma membrane
GO:0016010 IEA dystrophin-associated glycoprotein complex
GO:0016012 IEA sarcoglycan complex
GO:0032590 IDA dendrite membrane

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000012138 sgce sarcoglycan, epsilon protein_coding Danio_rerio
ENSG00000127990 SGCE sarcoglycan, epsilon protein_coding Homo_sapiens

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