C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: sarcoglycan, epsilon
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000127990 SGCE 9606 - 7:94585230-94656209 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000265735 SGCE-001 94585230-94656209 protein_coding
  ENST00000415788 SGCE-008 94588311-94656186 protein_coding
  ENST00000425444 SGCE-006 94623328-94656173 nonsense_mediated_decay
  ENST00000428696 SGCE-004 94585412-94656098 protein_coding
  ENST00000437425 SGCE-002 94585250-94656166 protein_coding
  ENST00000445866 SGCE-003 94585248-94656124 protein_coding
  ENST00000447873 SGCE-005 94585257-94656166 protein_coding
  ENST00000450385 SGCE-007 94618804-94656127 nonsense_mediated_decay
  ENST00000462731 SGCE-009 94600625-94603407 retained_intron
  ENST00000472326 SGCE-010 94585470-94599137 retained_intron
  ENST00000522045 SGCE-011 94585230-94600740 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000265735ENST00000415788ENST00000428696ENST00000437425ENST00000445866ENST00000447873ENST00000462731ENST00000472326
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000265735 7.749±0.00 4.497±0.00 2.234±0.00 2.778±0.64 4.120±1.22 10.528±9.01 1.373±0.53 2.328±1.01 3.018±0.90 6.061±0.03 1.056±0.00 23.803±12.62 15.115±0.77 16.642±0.00
ENST00000415788 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.745±0.00 N/A N/A
ENST00000428696 N/A N/A N/A 4.056±0.50 2.713±0.00 0.422±0.00 1.777±0.00 4.000±0.00 N/A 5.787±0.00 0.948±0.00 N/A N/A N/A
ENST00000437425 3.052±0.00 7.291±0.00 N/A 5.059±0.00 5.452±0.00 15.707±0.00 2.847±0.00 6.091±0.00 2.023±0.00 9.136±0.00 0.275±0.00 10.787±10.06 7.897±0.63 4.792±0.00
ENST00000445866 N/A N/A N/A N/A 2.106±0.00 N/A 1.740±0.00 1.051±0.00 2.586±1.09 N/A 0.934±0.00 N/A N/A N/A
ENST00000447873 2.886±0.00 4.014±0.00 N/A N/A 2.589±0.00 0.653±0.00 N/A N/A N/A N/A N/A 5.465±0.00 5.450±1.66 6.400±0.00
ENST00000462731 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 11.646±0.00 27.264±0.00 12.954±0.00
ENST00000472326 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 11.518±0.00 N/A 9.619±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00082O CIL_00082O_0001 VISTA 7:94046650-94649568
CIL_0007XR CIL_0007XR_0001 VISTA 7:94067785-94669696
CIL_00095G CIL_00095G_0001 VISTA 7:94074791-94676705
CIL_0008ZR CIL_0008ZR_0001 VISTA 7:94144032-94745602
CIL_0004SP CIL_0004SP_0002 CGP 7:94509219-94656209
CIL_0006DZ CIL_0006DZ_0001 CGP 7:94585230-94669695

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005509 IEA calcium ion binding
GO:0005515 IEA protein binding
GO:0005794 ISS Golgi apparatus
GO:0005856 IEA cytoskeleton
GO:0005886 ISS plasma membrane
GO:0005887 TAS integral component of plasma membrane
GO:0007160 TAS cell-matrix adhesion
GO:0007517 TAS muscle organ development
GO:0016010 IDA dystrophin-associated glycoprotein complex
GO:0016012 IEA sarcoglycan complex
GO:0016020 IEA membrane
GO:0032590 ISS dendrite membrane

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000012138 sgce sarcoglycan, epsilon protein_coding Danio_rerio
ENSMUSG00000004631 Sgce sarcoglycan, epsilon protein_coding Mus_musculus

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