C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: sarcoglycan, epsilon
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000115579 Sgce-001 ENSMUSG00000004631 10090 - 6:4674350-4747204 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000115579
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000115579 24.088±7.49 8.541±1.71 32.977±0.52 3.510±0.21 11.874±1.29 4.369±0.91 5.949±0.58 3.620±0.79 5.260±4.53 18.994±2.27 2.020±0.48 17.489±3.28 21.282±16.33 2.259±0.65

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00082O CIL_00082O_0002 VISTA 6:4156170-4759324
CIL_0007XR CIL_0007XR_0002 VISTA 6:4183463-4785322
CIL_00095G CIL_00095G_0002 VISTA 6:4188993-4790635
CIL_0008ZR CIL_0008ZR_0002 VISTA 6:4253537-4855066
CIL_0004SP CIL_0004SP_0003 CGP 6:4600840-4747204
CIL_0006DZ CIL_0006DZ_0002 CGP 6:4674350-4760517

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005509 IEA calcium ion binding
GO:0005515 IPI protein binding
GO:0005794 IDA Golgi apparatus
GO:0005856 IEA cytoskeleton
GO:0005886 IDA plasma membrane
GO:0005887 TAS integral component of plasma membrane
GO:0016012 IEA sarcoglycan complex
GO:0032590 IDA dendrite membrane

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000265735 SGCE-001 protein_coding Homo_sapiens 0 1927
ENST00000415788 SGCE-008 protein_coding Homo_sapiens 0 1485
ENST00000425444 SGCE-006 nonsense_mediated_decay Homo_sapiens 0 470
ENST00000428696 SGCE-004 protein_coding Homo_sapiens 0 1343
ENST00000437425 SGCE-002 protein_coding Homo_sapiens 0 1504
ENST00000445866 SGCE-003 protein_coding Homo_sapiens 0 1592
ENST00000447873 SGCE-005 protein_coding Homo_sapiens 0 1421
ENST00000450385 SGCE-007 nonsense_mediated_decay Homo_sapiens 0 686
ENST00000462731 SGCE-009 retained_intron Homo_sapiens 0 401
ENST00000472326 SGCE-010 retained_intron Homo_sapiens 0 320
ENST00000522045 SGCE-011 protein_coding Homo_sapiens 3e-39 165

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