C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: sarcoglycan, epsilon
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000090686 Sgce-007 ENSMUSG00000004631 10090 - 6:4674384-4747157 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverMuscleOvaryPlacentaTestisENSMUST00000090686
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Muscle Ovary Placenta Testis
ENSMUST00000090686 4.353±0.00 2.238±0.68 6.651±0.27 2.136±0.47 0.916±0.24 1.277±0.00 0.619±0.15 0.298±0.19 0.441±0.15 3.700±0.71 6.356±2.43 0.657±0.41

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00082O CIL_00082O_0002 VISTA 6:4156170-4759324
CIL_0007XR CIL_0007XR_0002 VISTA 6:4183463-4785322
CIL_00095G CIL_00095G_0002 VISTA 6:4188993-4790635
CIL_0008ZR CIL_0008ZR_0002 VISTA 6:4253537-4855066
CIL_0004SP CIL_0004SP_0003 CGP 6:4600840-4747204
CIL_0006DZ CIL_0006DZ_0002 CGP 6:4674350-4760517

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005509 IEA calcium ion binding
GO:0005887 TAS integral component of plasma membrane
GO:0016012 IEA sarcoglycan complex

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000265735 SGCE-001 protein_coding Homo_sapiens 0 1711
ENST00000415788 SGCE-008 protein_coding Homo_sapiens 0 1315
ENST00000425444 SGCE-006 nonsense_mediated_decay Homo_sapiens 0 470
ENST00000428696 SGCE-004 protein_coding Homo_sapiens 0 1592
ENST00000437425 SGCE-002 protein_coding Homo_sapiens 0 1334
ENST00000445866 SGCE-003 protein_coding Homo_sapiens 0 1423
ENST00000447873 SGCE-005 protein_coding Homo_sapiens 0 1840
ENST00000450385 SGCE-007 nonsense_mediated_decay Homo_sapiens 0 686
ENST00000462731 SGCE-009 retained_intron Homo_sapiens 0 399
ENST00000472326 SGCE-010 retained_intron Homo_sapiens 0 320
ENST00000522045 SGCE-011 protein_coding Homo_sapiens 1e-27 126

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