C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: H3 histone, family 3B
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000139623 H3f3b-002 ENSMUSG00000016559 10090 - 11:116023193-116024514 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBrainBreastColonHeartKidneyLiverMuscleOvaryPlacentaTestisENSMUST00000139623
Transcript ID Adipose Bladder Brain Breast Colon Heart Kidney Liver Muscle Ovary Placenta Testis
ENSMUST00000139623 23.245±5.77 80.409±18.54 51.761±0.00 21.108±1.97 30.646±0.00 12.049±3.20 30.323±10.29 92.939±21.37 12.049±1.55 123.985±0.00 183.548±77.60 84.199±3.34

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00078Q CIL_00078Q_0002 CGP 11:116008457-116027962
CIL_0008WF CIL_0008WF_0002 VISTA 11:116019003-116619995
CIL_00078R CIL_00078R_0002 CGP 11:116021912-116061214

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000066545 h3f3a-202 protein_coding Danio_rerio 0 228
ENSDART00000137017 h3f3a-001 protein_coding Danio_rerio 0 228
ENSDART00000157370 hist2h3c-001 protein_coding Danio_rerio 0 207
ENST00000254810 H3F3B-001 protein_coding Homo_sapiens 0 726
ENST00000340398 H3F3C-001 protein_coding Homo_sapiens 0 673
ENST00000586270 H3F3B-006 protein_coding Homo_sapiens 0 379
ENST00000586518 H3F3B-012 retained_intron Homo_sapiens 0 531
ENST00000586607 H3F3B-003 protein_coding Homo_sapiens 0 420
ENST00000587171 H3F3B-009 protein_coding Homo_sapiens 0 246
ENST00000587560 H3F3B-007 protein_coding Homo_sapiens 0 431
ENST00000589417 H3F3B-004 retained_intron Homo_sapiens 0 490
ENST00000589599 H3F3B-005 protein_coding Homo_sapiens 0 422
ENST00000589949 H3F3B-008 retained_intron Homo_sapiens 0 440
ENST00000591890 H3F3B-011 protein_coding Homo_sapiens 0 665
ENST00000592643 H3F3B-010 protein_coding Homo_sapiens 0 529
ENST00000593254 H3F3B-002 processed_transcript Homo_sapiens 0 625

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