C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: H3 histone, family 3B
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000016703 H3f3b-201 ENSMUSG00000016559 10090 - 11:116021961-116024504 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000016703
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000016703 69.294±37.47 40.182±6.27 120.504±8.09 260.945±186.75 77.815±38.30 168.726±35.20 27.330±5.15 60.922±17.60 115.775±80.43 165.665±5.57 16.905±1.81 98.914±28.63 111.435±73.49 88.380±39.64

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00078Q CIL_00078Q_0002 CGP 11:116008457-116027962
CIL_0008WF CIL_0008WF_0002 VISTA 11:116019003-116619995
CIL_00078R CIL_00078R_0002 CGP 11:116021912-116061214

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005654 TAS nucleoplasm
GO:0046982 IEA protein heterodimerization activity

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000066545 h3f3a-202 protein_coding Danio_rerio 0 322
ENSDART00000137017 h3f3a-001 protein_coding Danio_rerio 0 322
ENSDART00000157370 hist2h3c-001 protein_coding Danio_rerio 0 283
ENST00000254810 H3F3B-001 protein_coding Homo_sapiens 0 1770
ENST00000340398 H3F3C-001 protein_coding Homo_sapiens 0 1242
ENST00000586270 H3F3B-006 protein_coding Homo_sapiens 0 571
ENST00000586518 H3F3B-012 retained_intron Homo_sapiens 0 902
ENST00000586607 H3F3B-003 protein_coding Homo_sapiens 0 610
ENST00000587171 H3F3B-009 protein_coding Homo_sapiens 0 442
ENST00000587560 H3F3B-007 protein_coding Homo_sapiens 0 621
ENST00000589417 H3F3B-004 retained_intron Homo_sapiens 0 248
ENST00000589599 H3F3B-005 protein_coding Homo_sapiens 0 623
ENST00000589949 H3F3B-008 retained_intron Homo_sapiens 0 440
ENST00000591890 H3F3B-011 protein_coding Homo_sapiens 0 981
ENST00000592643 H3F3B-010 protein_coding Homo_sapiens 0 767
ENST00000593254 H3F3B-002 processed_transcript Homo_sapiens 0 1081

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