C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: solute carrier family 25, member 39
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000107098 Slc25a39-003 ENSMUSG00000018677 10090 - 11:102402985-102407489 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBreastColonHeartKidneyLiverLungOvaryTestisENSMUST00000107098
Transcript ID Adipose Breast Colon Heart Kidney Liver Lung Ovary Testis
ENSMUST00000107098 28.752±2.33 34.343±10.10 35.371±2.60 23.360±3.19 91.117±27.77 45.937±11.29 18.585±4.70 31.652±6.91 93.094±21.74

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0009B6 CIL_0009B6_0002 VISTA 11:102063033-102664797
CIL_0007ST CIL_0007ST_0002 VISTA 11:102292756-102896210
CIL_0005J9 CIL_0005J9_0002 CGP 11:102393403-102407946
CIL_0005J8 CIL_0005J8_0002 CGP 11:102402985-102437048

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005739 IDA mitochondrion
GO:0006810 IEA transport
GO:0016021 IEA integral component of membrane

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000225308 SLC25A39-001 protein_coding Homo_sapiens 0 1232
ENST00000377095 SLC25A39-006 protein_coding Homo_sapiens 0 1116
ENST00000537904 SLC25A39-005 protein_coding Homo_sapiens 0 979
ENST00000585695 SLC25A39-003 retained_intron Homo_sapiens 0 649
ENST00000586016 SLC25A39-008 protein_coding Homo_sapiens 0 833
ENST00000588049 SLC25A39-012 protein_coding Homo_sapiens 0 597
ENST00000588315 SLC25A39-002 retained_intron Homo_sapiens 0 545
ENST00000588767 SLC25A39-015 protein_coding Homo_sapiens 0 782
ENST00000590194 SLC25A39-007 protein_coding Homo_sapiens 0 1181
ENST00000591006 SLC25A39-004 retained_intron Homo_sapiens 0 597
ENST00000593166 SLC25A39-016 nonsense_mediated_decay Homo_sapiens 6e-24 115

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