C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: solute carrier family 25, member 39
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000018821 Slc25a39-001 ENSMUSG00000018677 10090 - 11:102402985-102407544 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000018821
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000018821 77.597±8.76 152.733±34.76 40.379±0.57 23.925±11.10 58.507±13.63 66.341±29.01 37.878±18.32 236.083±14.49 167.137±34.12 30.608±11.01 17.851±3.02 66.415±18.04 68.752±25.73 264.596±134.06

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0009B6 CIL_0009B6_0002 VISTA 11:102063033-102664797
CIL_0007ST CIL_0007ST_0002 VISTA 11:102292756-102896210
CIL_0005J9 CIL_0005J9_0002 CGP 11:102393403-102407946
CIL_0005J8 CIL_0005J8_0002 CGP 11:102402985-102437048

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005739 IDA mitochondrion
GO:0005743 IEA mitochondrial inner membrane
GO:0006783 IEA heme biosynthetic process
GO:0006810 IEA transport
GO:0016021 IEA integral component of membrane

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000225308 SLC25A39-001 protein_coding Homo_sapiens 0 1122
ENST00000377095 SLC25A39-006 protein_coding Homo_sapiens 0 1238
ENST00000537904 SLC25A39-005 protein_coding Homo_sapiens 0 981
ENST00000585695 SLC25A39-003 retained_intron Homo_sapiens 0 538
ENST00000586016 SLC25A39-008 protein_coding Homo_sapiens 0 833
ENST00000588049 SLC25A39-012 protein_coding Homo_sapiens 0 486
ENST00000588315 SLC25A39-002 retained_intron Homo_sapiens 0 412
ENST00000588767 SLC25A39-015 protein_coding Homo_sapiens 0 782
ENST00000590194 SLC25A39-007 protein_coding Homo_sapiens 0 1070
ENST00000591006 SLC25A39-004 retained_intron Homo_sapiens 0 486
ENST00000593166 SLC25A39-016 nonsense_mediated_decay Homo_sapiens 6e-24 115

Loading